This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_0062TRE.2

Display Name: Japan/PPD_0062TRE.2/2025-04-26
K. Kuroki & R. Kumagai

Submission details

Submission ID
LC880210.1
Submitting group
Date submitted
2025-07-06 04:43:01 UTC
Date released
2025-07-06 04:43:32 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-05 04:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Alignment and QC metrics

Completeness
5.81%
Frame shifts
G:228-237(nt:6927-6957)
Length
867
Total ambiguous nucs
0
Total deleted nucs
20
Total frame shifts
1
Total inserted nucs
111
Total SNPs
171
Total unknown nucs
0

Sample details

Earliest release date
2025-07-04
Collection subdivision level 1
Tokyo
Collection country
Japan
Collection date
2025-04-26
Collection date (lower bound)
2025-04-26
Collection date (upper bound)
2025-04-26
Isolate name
hMPV_A2b2/G/F25-189/Tokyo/2025

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-05

Lineage

Lineage
A2.2.2

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C6339T
  • G6345A
  • G6346A
  • A6364G
  • A6366T
  • T6367A
  • T6375G
  • T6405C
  • A6407C
  • G6411A
  • A6419C
  • C6420T
  • A6421G
  • T6438C
  • C6444T
  • A6450T
  • T6451C
  • T6458C
    • Deletions
    6907-6926
    Insertions
    ins_6711:ATAGTCTCCAAAACACAACTCCCATCACGGGCAACAACGAAGGCGGTCTCCAGAGCCACCACCCTCAGAACAAAAACAAAATCGACAGCCCACAGAAGAAACATCTCAAGC

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    G

  • G:V34I
  • G:T40A
  • G:L41M
  • G:I43M
  • G:K54T
  • G:M55I
  • G:N58T
  • G:T59A
  • G:S69P
  • G:M71T
  • G:S74N
  • G:R75K
  • G:P78S
  • G:V80I
  • G:T82I
  • G:S85Q
  • G:T87I
  • G:S89P
    • Deletions
    G:218-227
    Insertions
    ins_G:155:IVSKTQLPSRATTKAVSRATTLRTKTKSTAHRRNISS

    Report an issue with this sequence or metadata

    Create GitHub issue