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PPD_0062TRE.1

Display Name: Japan/PPD_0062TRE.1/2025-04-26
K. Kuroki

Submission details

Submission ID
LC880210.1
Submitting group
Date submitted
2025-07-05 04:40:57 UTC
Date released
2025-07-05 04:41:27 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-07-05 04:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Microbiology; 3-24-1 Hyakunin-cho, Shinjuku-ku, Tokyo 169-0073

Alignment and QC metrics

Completeness
5.81%
Frame shifts
G:228-237(nt:6927-6957)
Length
867
Total ambiguous nucs
0
Total deleted nucs
20
Total frame shifts
1
Total inserted nucs
111
Total SNPs
171
Total unknown nucs
0

Sample details

Earliest release date
2025-07-04
Collection subdivision level 1
Tokyo
Collection country
Japan
Collection date
2025-04-26
Collection date (lower bound)
2025-04-26
Collection date (upper bound)
2025-04-26
Isolate name
hMPV_A2b2/G/F25-189/Tokyo/2025

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession
NCBI release date
2025-07-04
NCBI update date
2025-07-04

Lineage

Lineage
A2.2.2

Nucleotide mutations

Mutations called relative to the NC_039199.1 reference

Substitutions

  • C6339T
  • G6345A
  • G6346A
  • A6364G
  • A6366T
  • T6367A
  • T6375G
  • T6405C
  • A6407C
  • G6411A
  • A6419C
  • C6420T
  • A6421G
  • T6438C
  • C6444T
  • A6450T
  • T6451C
  • T6458C
    • Deletions
    6907-6926
    Insertions
    ins_6711:ATAGTCTCCAAAACACAACTCCCATCACGGGCAACAACGAAGGCGGTCTCCAGAGCCACCACCCTCAGAACAAAAACAAAATCGACAGCCCACAGAAGAAACATCTCAAGC

    Amino acid mutations

    Mutations called relative to the NC_039199.1 reference

    Substitutions

    G

  • G:V34I
  • G:T40A
  • G:L41M
  • G:I43M
  • G:K54T
  • G:M55I
  • G:N58T
  • G:T59A
  • G:S69P
  • G:M71T
  • G:S74N
  • G:R75K
  • G:P78S
  • G:V80I
  • G:T82I
  • G:S85Q
  • G:T87I
  • G:S89P
    • Deletions
    G:218-227
    Insertions
    ins_G:155:IVSKTQLPSRATTKAVSRATTLRTKTKSTAHRRNISS

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