PPD_00JM2SL.2

Switzerland/PPD_00JM2SL.2/2026-05-04

G. Bloemberg, V. Chudzinski, S. Cordey, I. Eckerle, M. Huber, F. Laubscher, F.-J. Perez-Rodriguez, I. Pichler, M. Schibler, V. Thomasson, G. Ziltener & W. Zingg

University Hospitals of Geneva, Laboratory of Virology

Sample details

Collection date

2026-05-04

Sampling location

Switzerland

Isolate name

ANDV/Switzerland/Hu-3337/2026

Data use terms

Changed	User	Data use terms
2026-05-11 21:00	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

PZ385161.1

INSDC accession M

PZ385162.1

INSDC accession S

PZ385163.1

NCBI release date

2026-05-11

Host

human (Homo sapiens)

Submission details

Submission ID

PZ385161.1.L/PZ385162.1.M/PZ385163.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-13 21:00:54 UTC

Date released

2026-05-13 21:01:54 UTC

Earliest release date

2026-05-11

Alignment and QC

Length M

3649 (99.4%)

# of SNPs M

209

Length S

1853 (98.8%)

# of SNPs S

127

# of inserted bases S

# of deleted bases S

Length L

6561 (100%)

# of SNPs L

388

# of ambiguous bases L

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
G62A
T68G
C74T
C131T
C146T
C147T
G149A
C155T
C173T
T182C
T215C
A218G
A233C
T278C
A296G
T297C
A302G

M

G45A
T74C
T90C
G114A
C147T
C174T
C190T
A192G
C231T
C243T
A264G
T312C
C315T
G339C
T345C
A360G
T363C
A381G

S

G63A
G66A
G120A
A135G
T202C
A219G
T225C
T244C
T306C
G315A
A318G
C328T
C417T
C444A
G450A
T454C
C459T
G465A

Deletions

S

1443, 1573

Insertions

S

ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references