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Argentina/PPD_00JLY51.1
V. P. Martinez, U. Perez-Sautu, D. O. Alonso, N. Di Paola, C. M. Bellomo, A. A. Iglesias, R. M. Coelho, N. Periolo, E. R. Nagle, J. A. Chitty, C. B. Pratt, M. R. Wiley, J. Diaz, E. Biondo, L. Lewis, C. Anselmo, F. Pontoriero, E. Lavarra, J. H. Kuhn, M. Sanchez-Lockhart, A. Edelstein, D. Cisterna, J. Campos, M. Kaler, ..., C. Pratt

United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences

Sample details

Sampling location
Argentina
Isolate name
NRC-6/18_05/21/18

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 18:05insdc_ingest_userOPEN

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2020-09-30

Submission details

Submission ID
MN258161.1.L/MN258194.1.M/MN258228.1.S
Date submitted
2026-05-09 18:05:13 UTC
Date released
2026-05-09 18:06:54 UTC
Earliest release date
2020-09-30

Alignment and QC

Length M
3664 (99.6%)
# of SNPs M
216
# of inserted bases M
8
Length S
1867 (99.5%)
# of SNPs S
120
# of inserted bases S
7
# of deleted bases S
2
Length L
6548 (99.8%)
# of SNPs L
382
# of unknown bases L
1

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • T47C
  • G53A
  • C74T
  • C131T
  • T143C
  • C146T
  • G149A
  • C155T
  • A167G
  • T182C
  • A200G
  • A218G
  • G221A
  • T269C
  • A296G
  • T297C
  • A302G
  • T326C

M

  • A31G
  • T66C
  • T74C
  • G114A
  • C159A
  • C174T
  • C180A
  • C190T
  • A192G
  • C231T
  • C243T
  • A264G
  • G279A
  • A303G
  • T324C
  • G339A
  • T345C
  • A360G

S

  • G63A
  • G66A
  • G120A
  • A135G
  • C172T
  • A219G
  • T225C
  • A240G
  • T244C
  • A261G
  • T306C
  • A312G
  • G315A
  • A318G
  • G330A
  • T357C
  • T366C
  • C417T
Deletions

S

1443, 1573
Insertions

M

ins_3504:ATATACAT

S

ins_1482:CC, ins_1555:G, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:F216L
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353I
  • GPC:V499I
  • GPC:I537V
  • GPC:T641I
  • GPC:P721T
  • GPC:T938A
  • GPC:T1023A
  • GPC:V1115I

Gc

  • Gc:P70T
  • Gc:T287A
  • Gc:T372A
  • Gc:V464I

Gn

  • Gn:V8A
  • Gn:F216L
  • Gn:H294Y
  • Gn:V346I
  • Gn:T353I
  • Gn:V499I
  • Gn:I537V
  • Gn:T641I

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S
  • NSs:Q40R
  • NSs:N47S
  • NSs:I62T

RdRp

  • RdRp:T141V
  • RdRp:P149Q
  • RdRp:L277S
  • RdRp:S338A
  • RdRp:R346K
  • RdRp:D780N
  • RdRp:S876A
  • RdRp:N1033D
  • RdRp:D1303E
  • RdRp:S1440N
  • RdRp:K1750R
  • RdRp:Q1965H
  • RdRp:I2109V
Deletions
N/A
Insertions
N/A

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