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PPD_00JLY35.1

Argentina/PPD_00JLY35.1
V. P. Martinez, U. Perez-Sautu, D. O. Alonso, N. Di Paola, C. M. Bellomo, A. A. Iglesias, R. M. Coelho, N. Periolo, E. R. Nagle, J. A. Chitty, C. B. Pratt, M. R. Wiley, J. Diaz, E. Biondo, L. Lewis, C. Anselmo, F. Pontoriero, E. Lavarra, J. H. Kuhn, M. Sanchez-Lockhart, A. Edelstein, D. Cisterna, J. Campos, M. Kaler, ..., C. Pratt

United States Army Medical Research Institute for Infectious Diseases USAMRIID, Center for Genome Sciences

Sample details

Sampling location
Argentina
Isolate name
NRC-4/18_06/01/2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 18:05insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
INSDC accession M
INSDC accession S
NCBI release date
2020-09-30

Host

Host

Submission details

Submission ID
MN258159.1.L/MN258192.1.M/MN258226.1.S
Submitting group
Date submitted
2026-05-09 18:05:13 UTC
Date released
2026-05-09 18:06:54 UTC
Earliest release date
2020-09-30

Alignment and QC

Length M
3658 (99.4%)
# of SNPs M
205
# of inserted bases M
8
Length S
1860 (99.1%)
# of SNPs S
121
# of inserted bases S
7
# of deleted bases S
2
Length L
6545 (99.7%)
# of SNPs L
380
# of unknown bases L
1

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • T47C
  • C74T
  • C131T
  • C146T
  • C147T
  • G149A
  • C155T
  • C173T
  • T182C
  • T215C
  • A218G
  • A233C
  • A243G
  • T278C
  • A296G
  • T297C
  • A302G
  • T326C

M

  • G45A
  • T74C
  • T90C
  • G114A
  • C147T
  • C174T
  • C190T
  • A192G
  • C231T
  • C243T
  • A264G
  • T312C
  • C315T
  • G339C
  • T345C
  • A360G
  • T372C
  • A381G

S

  • G63A
  • G66A
  • G120A
  • A135G
  • T202C
  • A219G
  • T225C
  • T244C
  • T306C
  • A312G
  • G315A
  • A318G
  • T354G
  • G378A
  • C417T
  • C444A
  • G450A
  • T454C
Deletions

S

1443, 1573
Insertions

M

ins_3495:TGTATA, ins_3498:GT

S

ins_1481:NT, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:I114V
  • GPC:A193T
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353V
  • GPC:I537V
  • GPC:T994A
  • GPC:T1023A
  • GPC:S1055T
  • GPC:V1127I

Gc

  • Gc:T343A
  • Gc:T372A
  • Gc:S404T
  • Gc:V476I

Gn

  • Gn:V8A
  • Gn:I114V
  • Gn:A193T
  • Gn:H294Y
  • Gn:V346I
  • Gn:T353V
  • Gn:I537V

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S
  • NSs:I62T

RdRp

  • RdRp:I70V
  • RdRp:T141I
  • RdRp:R144K
  • RdRp:L277S
  • RdRp:S338A
  • RdRp:R346K
  • RdRp:I402V
  • RdRp:A541V
  • RdRp:D780N
  • RdRp:N1033D
  • RdRp:D1303E
  • RdRp:V1665I
  • RdRp:K1750R
  • RdRp:T2113A
Deletions
N/A
Insertions
N/A

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