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PPD_00JJMQB.1

Turkey/PPD_00JJMQB.1/2023-07-14
Q. Lin, N. Elaldi, M. Yigit, B. Yildiz, R. Hewson, M. Lopez-Garcia, G. Lythe, A. N. Pektas, B. Koksal, T. N. Tasseten, A. Deniz, H. Bedir, Y. Cakir Kiymaz, Z. Vatansever, C. Molina-Paris & T. Leitner

Kafkas University, Department of Parasitology

Sample details

Collection date
2023-07-14
Sampling location
Turkey (Sivas, Zara, Kurucaabat)
Isolate name
TRKAU/T-435-6/Zara/2023

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-22 01:35insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
NCBI release date
2026-04-19

Host

Host

Submission details

Submission ID
PX875079.1.L
Submitting group
Date submitted
2026-04-22 01:35:08 UTC
Date released
2026-04-22 01:47:32 UTC
Earliest release date
2026-04-19

Alignment and QC

Length L
12122 (99.9%)
# of SNPs L
1326
# of inserted bases L
32
# of deleted bases L
2

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G23T
  • A35G
  • A42T
  • G43C
  • T49C
  • A53G
  • T58C
  • C59T
  • C63T
  • C64G
  • T66C
  • A72G
  • A73C
  • G90A
  • A91G
  • G93A
  • C100T
  • A109G
Deletions

L

12093, 12094
Insertions

L

ins_67:C, ins_11924:G, ins_12108:CTCATTATTTGAAGGGTGTGGGGGGAACGA

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:R5K
  • RdRp:S6N
  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
  • RdRp:I117V
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:I176M
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K218R
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
Deletions
N/A
Insertions
N/A

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