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PPD_00493QU.2

Display Name: Portugal/PPD_00493QU.2/2024-09-10
Maroco, D.; Parreira, R.; dos Santos, F. A.; Lopes, A.; Simoes, F.; Orge, L.; Seabra, S. G.; Fagulha, T.; Brazio, E.; Henriques, A. M.; Duarte, A.; Duarte, M. D.; Barros, S. C.

Submission details

Submission ID
PQ660506.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-05 21:20:53 UTC
Date released
2025-03-05 21:20:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2025-03-02 03:45insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
National Institute for Agricultural and Veterinary Research (INIAV), Virology

Alignment and QC metrics

Completeness
99.61%
Length
10986
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
461
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2025-03-01
Collection country
Portugal
Collection date
2024-09-10
Collection date (lower bound)
2024-09-10
Collection date (upper bound)
2024-09-10
Isolate name
WNV/18665/PT2024

INSDC

INSDC accession
PQ660506.1
NCBI release date
2025-03-01
NCBI update date
2025-03-05

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • G447T
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • T642C
  • G786A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S

    • NS2A

  • NS2A:L158M

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:I175V
  • NS3:P249T
  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K280R
  • NS5:L768Q

    • env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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