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PPD_001H30V.1

Display Name: Uganda/PPD_001H30V.1/2022-10-22
A. Kagirita, A. Tumusiime, C. Nassuna, E. Shedroff, F. Scholte, G. Pimundu, H. Kyobe, I. Krapiunaya, I. Ssewanyana, J. Baluku, J. Kiconco, J. Klena, J. Kyondo, J. Lutwama, J. Montgomery, L. Nyakarahuka, M. Kainulainen, P. Kaleebu, S. Balinandi, S. Mulei, S. Nabadda, S. Whitmer, T. Muyiji, T. Shoemaker

Submission details

Submission ID
OQ672993.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-08-27 20:42:55 UTC
Date released
2024-08-27 20:43:33 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 20:42insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
99.49%
Length
18815
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
131
Total stop codons
0
Total unknown nucs
36

Sample details

Collection subdivision level 2
Africa
Collection country
Uganda
Collection date
2022-10-22
Isolate name
Ebolavirus/H.sapiens-wt/Uganda/2022/2022003085_C102

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OQ672993.1
NCBI release date
2023-08-08
NCBI update date
2023-08-08

Nucleotide mutations

Substitutions

  • A309G
  • A314G
  • A496G
  • G575A
  • T718C
  • G982A
  • T1063C
  • A1537C
  • C1646T
  • A1669G
  • T1816G
  • C1837T
  • A1978G
  • G1984A
  • C2094T
  • C2194T
  • A2293G
  • G2390A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GP

  • GP:G3S
  • GP:S408N

    • L

  • L:K43R
  • L:K651N
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:V1600I
  • L:N1822D
  • L:P1877S
  • L:K1911R
  • L:N1916T

    • NP

  • NP:V40I
  • NP:S546L
  • NP:G645R
  • NP:R711C
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:N153S
  • VP35:I190T

    • VP40

  • VP40:R2K

    • sGP

  • sGP:G3S

    • ssGP

  • ssGP:G3S
    • Deletions
    None
    Insertions
    None