This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

Introduction

Pathoplexus is a powerful platform designed to streamline the process of managing, sharing, and analyzing pathogen sequence data. This documentation serves as a guide to understanding and utilizing the features of Pathoplexus effectively.

How to use this documentation

Our documentation is divided into two main sections:

  1. Concepts: Dive deep into the terms and formats used in Pathoplexus. This section explains key terms and processes that make up the platform.

  2. How to: Step-by-step guides for common tasks and operations within Pathoplexus. Whether you’re setting up your account, uploading sequences, or using advanced features, you’ll find detailed instructions here.

Getting started

New to Pathoplexus? Begin your journey by:

  1. Creating an account
  2. Linking your ORCiD

For any questions or issues not covered in this documentation, please don’t hesitate to contact our support team or report issues directly through the platform.

Welcome to Pathoplexus!