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PPD_00TA9M3.1
Download
Download FASTA
Download metadata TSV
DENV-1/Central_African_Republic/PPD_00TA9M3.1/2026-06-19
M. A. Stepanyuk,
A. O. Sementsova,
K. V. Karelina,
E. P. Ponomareva,
L. V. Maksimenko,
M. V. Sivay,
T. V. Tregubchak,
V. A. Ternovoi &
N. L. Tupota
State Research Center of Virology and Biotechnology 'Vector', Molecular Virology of Flaviviruses and Viral Hepatitis
Sample details
Collection date
2026-06-19
Sampling location
Central African Republic
Isolate name
Central African Republic_2026_1189
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage & Serotype
Lineage
1VII_A
Serotype
DENV-1
INSDC
INSDC accession
QB220886.1
NCBI release date
2026-10-27
NCBI update date
2026-10-27
Host
Host
human (Homo sapiens)
Submission details
Submission ID
QB220886.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-28 09:32:18 UTC
Date released
2026-10-28 09:33:20 UTC
Earliest release date
2026-10-27
Files
Annotations
PPD_00TA9M3.1.embl
Alignment and QC
Length
10735 (100%)
# of SNPs
805
# of ambiguous bases
1
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
T
208
C
T
244
C
T
274
C
T
343
C
G
349
A
A
355
G
A
363
G
C
364
T
A
391
G
T
397
C
C
412
T
G
436
T
C
443
T
C
451
A
G
466
A
C
469
T
A
493
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
2K
2K:
M
17
I
C
C:
V
26
G
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
F
96
L
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
S
339
I
E:
T
346
I
E:
A
369
T
E:
E
384
G
E:
A
386
T
E:
I
436
V
E:
I
439
V
NS1
NS1:
S
2
T
NS1:
S
94
N
NS1:
I
104
V
NS1:
V
128
I
NS1:
N
139
D
NS1:
N
146
D
NS1:
V
178
M
NS1:
I
251
T
NS1:
T
307
I
NS1:
K
347
R
NS2A
NS2A:
S
7
N
NS2A:
I
15
V
NS2A:
I
19
V
NS2A:
T
44
I
NS2A:
M
45
T
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
A
147
T
NS2A:
K
156
R
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
F
178
L
NS2A:
F
207
Y
NS2B
NS2B:
E
58
K
NS2B:
I
106
V
NS3
NS3:
V
13
A
NS3:
R
15
K
NS3:
E
43
D
NS3:
L
65
V
NS3:
S
88
L
NS3:
N
90
S
NS3:
A
91
T
NS3:
K
107
R
NS3:
A
112
T
NS3:
V
221
I
NS3:
S
250
T
NS3:
K
255
R
NS3:
V
384
I
NS3:
I
474
V
NS4A
NS4A:
Q
19
L
NS4A:
R
20
K
NS4A:
T
54
I
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4A:
R
125
K
NS4B
NS4B:
A
18
V
NS4B:
N
22
D
NS4B:
H
24
Q
NS4B:
A
27
T
NS4B:
H
34
R
NS4B:
A
163
T
NS5
NS5:
I
34
T
NS5:
T
59
A
NS5:
Y
127
H
NS5:
T
135
I
NS5:
K
364
R
NS5:
R
378
K
NS5:
N
585
S
NS5:
A
616
V
NS5:
S
629
L
NS5:
K
647
E
NS5:
T
651
V
NS5:
V
686
I
NS5:
V
784
A
NS5:
F
881
Y
prM
prM:
T
59
V
prM:
E
72
D
prM:
D
89
E
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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