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PPD_00T9S5M.1
Download
Download FASTA
Download metadata TSV
USA/PPD_00T9S5M.1/2026-10-02
M. Scully,
N. Greer,
N. Hayward,
R. Hoover &
D. Toy
Delaware Public Health Lab, Sequencing & Bioinformatics
Sample details
Collection date
2026-10-02
Sampling location
USA (Pennsylvania)
Isolate name
DE-2026-0023
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Genotype
Genotype
D8
INSDC
INSDC accession
QB184526.1
NCBI release date
2026-10-26
NCBI update date
2026-10-26
Host
Host
human (Homo sapiens)
Submission details
Submission ID
QB184526.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-27 04:31:10 UTC
Date released
2026-10-27 04:32:08 UTC
Earliest release date
2026-10-26
Files
Annotations
PPD_00T9S5M.1.embl
Alignment and QC
Length
15791 (98.7%)
# of SNPs
545
# of ambiguous bases
3
# of unknown bases
101
Nucleotide mutations
Mutations called relative to the
NC_001498.1
reference
Substitutions
G
97
A
G
122
A
G
269
A
G
293
A
G
305
A
C
341
T
A
344
G
G
353
A
G
368
A
A
413
G
T
422
C
T
449
C
C
518
T
C
538
T
T
572
C
C
596
T
G
626
A
C
629
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001498.1
reference
Substitutions
C
C:
D
5
G
C:
E
40
D
C:
K
78
R
C:
G
181
V
F
F:
A
9
V
F:
F
11
V
F:
S
276
A
F:
H
419
R
H
H:
R
175
K
H:
G
235
E
H:
G
243
E
H:
A
267
I
H:
E
277
K
H:
R
334
Q
H:
N
390
I
H:
A
400
T
H:
V
412
L
H:
N
416
D
H:
T
446
S
H:
V
451
M
H:
K
575
Q
H:
V
608
A
L
L:
P
43
S
L:
A
81
T
L:
R
142
K
L:
A
252
T
L:
P
275
S
L:
F
321
C
L:
E
329
D
L:
L
610
S
L:
Y
613
H
L:
R
623
K
L:
E
628
K
L:
V
632
I
L:
N
641
D
L:
I
650
M
L:
T
652
A
L:
D
728
A
L:
D
1037
G
L:
R
1044
G
Show more
N
N:
S
144
F
N:
K
214
Q
N:
V
234
I
N:
I
406
T
N:
K
441
R
N:
G
443
S
N:
E
446
G
N:
Y
451
N
N:
S
457
I
N:
A
459
L
N:
P
467
L
N:
M
471
T
N:
R
497
K
N:
G
509
S
P
P:
A
48
S
P:
E
54
K
P:
T
92
A
P:
K
195
R
P:
S
219
G
P:
A
269
V
P:
G
270
E
P:
I
282
T
P:
I
293
L
P:
K
350
R
P:
R
355
K
P:
V
414
A
P:
V
446
M
P:
A
459
V
V
V:
A
48
S
V:
E
54
K
V:
T
92
A
V:
K
195
R
V:
S
219
G
V:
G
237
S
V:
N
293
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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