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PPD_00T83VX.1

DENV-1/Kenya/PPD_00T83VX.1/2026-04-28
J. N. Kamau, G. Kerich, J. Thiiru, J. Ambale, P. Kyalo, C. Ojino, L. Awuor, D. Oullo, S. Yalwala, F. Ngere, N. Odemba, C. Waga, R. Odinga, E. Achieng, G. Otedo, E. Kioko, A. Mann & J. Lutomiah

WRAIR-Africa (Kenya), Entomology

Sample details

Collection date
2026-04-28
Sampling location
Kenya (Mombasa County, KPA Ports)
Isolate name
MBSA/S2/51918B

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage & Serotype

Lineage
1III_A.2
Serotype
DENV-1

INSDC

INSDC accession
NCBI release date
2026-10-19
NCBI update date
2026-10-19

Host

Host

Submission details

Submission ID
QB174221.1
Submitting group
Date submitted
2026-10-20 09:32:23 UTC
Date released
2026-10-20 09:33:12 UTC
Earliest release date
2026-10-19

Files

Annotations

Alignment and QC

Length
10427 (97.3%)
# of SNPs
853
# of deleted bases
21

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions
  • A112G
  • T171G
  • T208C
  • T230A
  • T244C
  • T274C
  • G302A
  • C328T
  • G340A
  • G349A
  • A355G
  • A363G
  • T368C
  • G388A
  • T397C
  • C412T
  • T442C
  • C443T
Deletions
10296-10311, 10318-10322
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001477.1 reference

Substitutions

C

  • C:V26G
  • C:L46M
  • C:G70S
  • C:N90S

E

  • E:D37N
  • E:T88A
  • E:I114L
  • E:T161I
  • E:K203E
  • E:I293T
  • E:M297V
  • E:F337I
  • E:S339T
  • E:A369T
  • E:V380I
  • E:V428M
  • E:I436V
  • E:I439L

NS1

  • NS1:V89I
  • NS1:V93A
  • NS1:S94N
  • NS1:A98T
  • NS1:V128T
  • NS1:T131A
  • NS1:N139D
  • NS1:N146D
  • NS1:I162V
  • NS1:V178M
  • NS1:K227R
  • NS1:D278N
  • NS1:T307I
  • NS1:K324R
  • NS1:K347R

NS2A

  • NS2A:F8L
  • NS2A:I15V
  • NS2A:L41F
  • NS2A:T44I
  • NS2A:A64V
  • NS2A:K67R
  • NS2A:R82K
  • NS2A:V106I
  • NS2A:A147T
  • NS2A:V155I
  • NS2A:K156R
  • NS2A:F159L
  • NS2A:H162D
  • NS2A:I171V
  • NS2A:L199F

NS2B

  • NS2B:K55R
  • NS2B:I106V

NS3

  • NS3:E43D
  • NS3:A91T
  • NS3:A112T
  • NS3:R185K
  • NS3:V221I
  • NS3:Y349H
  • NS3:V384I
  • NS3:V452A

NS4A

  • NS4A:R76K
  • NS4A:I89M
  • NS4A:A93V

NS4B

  • NS4B:A18V
  • NS4B:A19V
  • NS4B:A27T
  • NS4B:V31I
  • NS4B:K212R

NS5

  • NS5:I34M
  • NS5:L123I
  • NS5:K130R
  • NS5:I181V
  • NS5:V270I
  • NS5:K364R
  • NS5:A365P
  • NS5:R378K
  • NS5:E559Q
  • NS5:N585S
  • NS5:A616V
  • NS5:T635N
  • NS5:P636S
  • NS5:V642A
  • NS5:K647E
  • NS5:T651V
  • NS5:I669T
  • NS5:F881Y

prM

  • prM:S15T
  • prM:T59A
  • prM:E72D
  • prM:K118R
Deletions
N/A
Insertions
N/A

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