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PPD_00T813J.1
Download
Download FASTA
Download metadata TSV
Kenya/PPD_00T813J.1/2025-08-29
G. Kimita,
B. K. Mutai,
J. N. Nyataya,
A. P. Lemtudo &
J. N. Waitumbi
Wrair-Africa, Basic Science Laboratory
Sample details
Collection date
2025-08-29
Sampling location
Kenya (Lamu, Lamu West)
Isolate name
hChikV/Kenya/AFI-LAM-2613/2025
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
II-ECSA
INSDC
INSDC accession
PZ737885.1
NCBI release date
2026-10-19
NCBI update date
2026-10-19
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ737885.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-20 09:00:50 UTC
Date released
2026-10-20 09:01:28 UTC
Earliest release date
2026-10-19
Files
Annotations
PPD_00T813J.1.embl
Alignment and QC
Length
11840 (100%)
# of SNPs
387
# of inserted bases
31
# of deleted bases
17
Nucleotide mutations
Mutations called relative to the
NC_004162.2
reference
Substitutions
G
68
T
T
163
A
T
244
C
T
268
C
T
271
C
T
319
C
A
337
G
C
358
T
C
409
T
C
448
A
C
459
A
T
490
C
A
493
C
G
520
T
A
575
G
T
590
G
A
604
T
T
610
C
Show more
Deletions
11445-11458, 11628-11630
Insertions
ins_11534:GG, ins_11826:AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Amino acid substitutions
Substitutions called relative to the
NC_004162.2
reference
Substitutions
6K
6K:
V
8
I
6K:
I
54
V
C
C:
P
23
S
C:
V
27
I
C:
K
63
R
E1
E1:
I
55
V
E1:
K
211
E
E1:
M
269
V
E1:
D
284
E
E1:
V
322
A
E2
E2:
G
57
K
E2:
I
74
M
E2:
G
79
E
E2:
N
160
T
E2:
A
164
T
E2:
L
181
M
E2:
S
194
G
E2:
I
211
T
E2:
V
264
A
E2:
M
267
R
E2:
S
299
N
E2:
T
312
M
E2:
A
344
T
E2:
S
375
T
E2:
V
386
A
E2:
M
390
I
E2:
I
415
V
E2:
I
418
V
E3
E3:
I
23
T
nsP1
nsP1:
T
128
K
nsP1:
I
167
V
nsP1:
L
172
V
nsP1:
E
234
K
nsP1:
M
383
L
nsP1:
I
384
L
nsP1:
L
407
P
nsP1:
T
481
I
nsP1:
Q
488
R
nsP1:
L
507
R
nsP2
nsP2:
S
54
N
nsP2:
H
374
Y
nsP2:
C
642
Y
nsP2:
S
643
N
nsP3
nsP3:
I
171
V
nsP3:
V
175
I
nsP3:
Y
217
H
nsP3:
P
326
S
nsP3:
V
331
A
nsP3:
T
337
I
nsP3:
K
352
E
nsP3:
I
376
T
nsP3:
A
382
I
nsP3:
L
461
P
nsP3:
S
462
N
nsP3:
P
471
L
nsP3:
R
524
*
nsP4
nsP4:
T
75
A
nsP4:
P
110
S
nsP4:
T
254
A
nsP4:
Q
500
L
nsP4:
I
514
T
nsP4:
V
555
I
nsP4:
V
604
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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