This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00T7JK4.1

Ethiopia/PPD_00T7JK4.1/2025-11-25
M. Feyssa, G. Tollera, S. Abdella, C. Bashea, B. Zerihun, M. Getu, G. Gebremicael, E. Kidane, A. Weldemariam, G. Tasew, R. Abubeker, M. Niazy, G. Leta, A. Ali & D. Wolday

McMaster University, Hamilton, ON

Sample details

Collection date
2025-11-25
Sampling location
Ethiopia (Ari Zone; Jinka)
Isolate name
Ethiopia/PP_00731R3/2025-11-25

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
MARV.A.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-10-16
NCBI update date
2026-10-16

Submission details

Submission ID
OZ570499.1
Submitting group
Date submitted
2026-10-16 20:00:31 UTC
Date released
2026-10-16 20:00:42 UTC
Earliest release date
2026-10-16

Files

Annotations

Alignment and QC

Length
19043 (99.6%)
# of SNPs
1163
# of inserted bases
1

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions
  • A35G
  • G101A
  • C115T
  • T118C
  • G124A
  • T157C
  • A169G
  • G214A
  • C256T
  • A262G
  • G289A
  • T304C
  • G310A
  • G337A
  • G340A
  • A346G
  • A364G
  • C433T
Deletions
N/A
Insertions
ins_18681:G

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:K158R
  • GP:S201N
  • GP:Q205K
  • GP:K222N
  • GP:P233S
  • GP:L244P
  • GP:D250N
  • GP:K253T
  • GP:S260N
  • GP:A267I
  • GP:R276Q
  • GP:P278S
  • GP:H279Y
  • GP:A284T

L

  • L:A115V
  • L:S128P
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:T399V
  • L:E536D
  • L:N761D
  • L:N887S
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:D1162E
  • L:K1164E
  • L:E1180G

NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S

VP24

  • VP24:N17K
  • VP24:K237R

VP30

  • VP30:V15A
  • VP30:P17S
  • VP30:T18S
  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:G278S

VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
  • VP35:S193A

VP40

  • VP40:V57I
  • VP40:V303I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue