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PPD_00T7JH8.1

Ethiopia/PPD_00T7JH8.1/2025-11-21
M. Feyssa, G. Tollera, S. Abdella, C. Bashea, B. Zerihun, M. Getu, G. Gebremicael, E. Kidane, A. Weldemariam, G. Tasew, R. Abubeker, M. Niazy, G. Leta, A. Ali & D. Wolday

McMaster University, Hamilton, ON

Sample details

Collection date
2025-11-21
Sampling location
Ethiopia (Ari Zone; Jinka)
Isolate name
Ethiopia/PP_00731Q5/2025-11-21

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
MARV.A.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-10-16
NCBI update date
2026-10-16

Submission details

Submission ID
OZ570453.1
Submitting group
Date submitted
2026-10-16 20:00:31 UTC
Date released
2026-10-16 20:00:42 UTC
Earliest release date
2026-10-16

Files

Annotations

Alignment and QC

Length
18472 (93%)
# of SNPs
1000
# of ambiguous bases
1
# of unknown bases
706

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions
  • G101A
  • C115T
  • T118C
  • G124A
  • T157C
  • A169G
  • G214A
  • C256T
  • A262G
  • G289A
  • T304C
  • G310A
  • G337A
  • G340A
  • A346G
  • A364G
  • C433T
  • C443T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:F6L
  • GP:L7F
  • GP:T16I
  • GP:N18T
  • GP:K158R
  • GP:S201N
  • GP:Q205K
  • GP:K222N
  • GP:P233S
  • GP:L244P
  • GP:D250N
  • GP:K253T
  • GP:S260N
  • GP:A267I
  • GP:R276Q
  • GP:P278S
  • GP:H279Y
  • GP:A284T

L

  • L:A115V
  • L:S128P
  • L:V189I
  • L:I214V
  • L:H335C
  • L:D336S
  • L:L341F
  • L:D345G
  • L:T399V
  • L:E536D
  • L:N761D
  • L:N887S
  • L:F937C
  • L:S957A
  • L:K981R
  • L:E1143K
  • L:D1162E
  • L:K1164E

NP

  • NP:V334I
  • NP:R407Q
  • NP:M428I
  • NP:D440N
  • NP:G481S
  • NP:A577V
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S

VP24

  • VP24:N17K
  • VP24:K237R

VP30

  • VP30:V15A
  • VP30:P17S
  • VP30:T18S
  • VP30:Y34H
  • VP30:S63P
  • VP30:A88T
  • VP30:P125L
  • VP30:S159N
  • VP30:M201I
  • VP30:G278S

VP35

  • VP35:I62V
  • VP35:R70K
  • VP35:S91N
  • VP35:A184E
  • VP35:S193A

VP40

  • VP40:V57I
  • VP40:V303I
Deletions
N/A
Insertions
N/A

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