This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00T5SAK.1

Uganda/BX3.71_88_A5_F-Pan_Nairo_F/2025-11-21
M. G. Onyango

Texas Tech University, Biology

Sample details

Collection date
2025-11-21
Sampling location
Uganda
Isolate name
BX3.71_88_A5_F-Pan_Nairo_F

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession L
NCBI release date
2026-10-04

Host

Host

Submission details

Submission ID
PZ713914.1.L
Submitting group
Date submitted
2026-10-05 08:37:42 UTC
Date released
2026-10-05 08:38:02 UTC
Earliest release date
2026-10-04

Files

Annotations

Alignment and QC

Length L
408 (3.25%)
# of SNPs L
87
# of unknown bases L
15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • C1024T
  • C1036G
  • G1046T
  • T1048C
  • C1051T
  • G1061C
  • A1064C
  • A1066T
  • T1075C
  • A1076G
  • G1081T
  • C1082T
  • G1096A
  • G1106C
  • C1111T
  • A1120G
  • A1123C
  • C1132T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:A324S
  • RdRp:G329R
  • RdRp:I330L
  • RdRp:M334V
  • RdRp:Q335H
  • RdRp:D344H
  • RdRp:N362M
  • RdRp:K382N
  • RdRp:A399S
  • RdRp:R401T
  • RdRp:C408W
  • RdRp:S409V
  • RdRp:Q415L
  • RdRp:I416V
  • RdRp:N417T
  • RdRp:L419V
  • RdRp:Q420H
  • RdRp:R424K
  • RdRp:S427N
  • RdRp:D440H
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue