This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Organisms
Chikungunya Virus
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Andes Virus [Hantavirus]
Chikungunya Virus
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Bundibugyo
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
Zika Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
Chikungunya Virus
|
Browse data
Submit sequences
Resources
Select organism section
Browse data
Submit sequences
Resources
PPD_00T5G2B.1
Download
Download FASTA
Download metadata TSV
French_Guiana/CHIK26-002-SUR-20260127/2026-01-27
M. P. Sinturel,
D. Rousset,
A. Enfissi,
T. Ramavoson,
C. Kezza,
F. Jourdain,
F. Djossou,
T. Succo &
A. Lagrave
Institut Pasteur de la Guyane, Arbovirus National Reference Center - Virology Unit
Sample details
Collection date
2026-01-27
Sampling location
French Guiana (Cayenne)
Isolate name
CHIK26-002-SUR-20260127
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
II-ECSA
INSDC
INSDC accession
PZ246470.1
NCBI release date
2026-06-27
NCBI update date
2026-06-27
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ246470.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-02 14:52:02 UTC
Date released
2026-10-02 15:17:14 UTC
Earliest release date
2026-06-27
Files
Annotations
PPD_00T5G2B.1.embl
Alignment and QC
Length
11729 (99.3%)
# of SNPs
383
# of inserted bases
2
# of deleted bases
15
Nucleotide mutations
Mutations called relative to the
NC_004162.2
reference
Substitutions
T
163
C
T
265
C
T
268
C
T
271
C
G
277
A
T
319
C
T
334
C
C
385
T
A
481
G
A
493
C
A
521
G
T
590
G
T
610
C
C
661
T
T
670
C
T
679
C
C
745
T
A
766
G
Show more
Deletions
11445-11458, 11629
Insertions
ins_11435:AA
Amino acid substitutions
Substitutions called relative to the
NC_004162.2
reference
Substitutions
6K
6K:
I
54
V
C
C:
F
3
Y
C:
K
63
R
C:
Q
74
R
C:
H
119
Y
E1
E1:
K
211
T
E1:
T
288
I
E1:
A
305
T
E1:
V
322
A
E1:
A
377
V
E1:
M
407
L
E2
E2:
G
57
K
E2:
I
74
T
E2:
G
79
E
E2:
A
103
T
E2:
N
160
T
E2:
A
164
T
E2:
L
181
M
E2:
S
194
G
E2:
M
267
R
E2:
S
299
N
E2:
A
344
T
E2:
I
377
V
E2:
M
384
V
E3
E3:
I
23
T
E3:
K
29
R
nsP1
nsP1:
I
149
V
nsP1:
L
172
V
nsP1:
E
234
K
nsP1:
M
383
L
nsP1:
I
384
L
nsP1:
T
481
I
nsP1:
L
507
R
nsP2
nsP2:
P
352
A
nsP2:
H
374
Y
nsP2:
M
466
L
nsP2:
L
494
I
nsP2:
A
545
S
nsP2:
C
642
Y
nsP2:
S
643
N
nsP2:
A
645
V
nsP3
nsP3:
S
77
L
nsP3:
V
175
T
nsP3:
P
326
S
nsP3:
Q
328
P
nsP3:
S
330
A
nsP3:
V
331
A
nsP3:
K
352
E
nsP3:
G
374
R
nsP3:
I
376
T
nsP3:
A
382
T
nsP3:
L
434
P
nsP3:
C
435
R
nsP3:
S
462
N
nsP3:
R
524
*
nsP4
nsP4:
A
43
V
nsP4:
P
93
S
nsP4:
I
111
V
nsP4:
A
481
D
nsP4:
Q
500
L
nsP4:
I
514
T
nsP4:
V
555
I
nsP4:
V
604
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue