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PPD_00T5ETW.1

China/HMCN2025084/2025-08-31
Z. Xu & F. Yin

Hainan Medical University, School of Basci Medical Sciences

Sample details

Collection date
2025-08-31
Sampling location
China
Isolate name
HMCN2025084

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-08-11
NCBI update date
2026-08-11

Host

Host

Submission details

Submission ID
PX968314.1
Submitting group
Date submitted
2026-10-02 14:52:02 UTC
Date released
2026-10-02 15:17:14 UTC
Earliest release date
2026-08-11

Files

Annotations

Alignment and QC

Length
2480 (21%)
# of SNPs
109

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • A8511C
  • C8587T
  • T8607C
  • G8679A
  • C8694T
  • T8703C
  • G8710A
  • G8711A
  • T8727C
  • C8736T
  • T8757C
  • T8762C
  • G8777A
  • C8784G
  • T8795C
  • A8811G
  • A8865G
  • A8893G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

6K

  • 6K:I54V
  • 6K:S60N

E1

  • E1:N9S
  • E1:T37I
  • E1:A226V
  • E1:S250P
  • E1:M269V
  • E1:I317V
  • E1:V322A
  • E1:K324R

E2

  • E2:G57K
  • E2:I74T
  • E2:G79E
  • E2:V85A
  • E2:S118G
  • E2:K149R
  • E2:N160T
  • E2:A164T
  • E2:L181M
  • E2:S194G
  • E2:L210Q
  • E2:I211T
  • E2:V222I
  • E2:A227V
  • E2:A246D
  • E2:M267R
  • E2:Q282K
  • E2:S299N
  • E2:A344T
  • E2:I415L
Deletions
N/A
Insertions
N/A

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