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PPD_00T5ER0.1

Mexico/UADY-tam_Yucatan_2025/2025-11
D. Canul-Canul, K. J. Ciau-Carrillo, J. R. Canche-Pech, C. Canas-Alamilla, J. Ku-Cachon, A. Osorio-Medrano, M. E. Lopez-Novelo, I. Garcia-Gonzalez, J. T. Earnest, D. Limonta, N. Pavia-Ruz, P. Manrique-Saide, F. Correa-Morales, G. Ayora-Talavera, L. Conde-Ferraez, A. Che-Mendoza, J. Palacio-Vargas, R. Valdez-Vazquez, C. F. Campelo de Albuquerque, G. Vazquez-Prokopec, T. I. Vasylyeva, M. Escalera-Zamudio, M. A. Garcia-Knight, H. Puerta-Guardo & Y. Balan-Cruz

Universidad Autonoma de Yucatan (UADY), Virology Laboratory, Centro de Investigaciones Regionales Dr. Hideyo Noguchi

Sample details

Collection date
2025-11
Sampling location
Mexico (Merida)
Isolate name
UADY-tam_Yucatan_2025

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-04-20
NCBI update date
2026-04-20

Host

Host

Submission details

Submission ID
PX935461.1
Submitting group
Date submitted
2026-10-02 14:52:02 UTC
Date released
2026-10-02 15:17:14 UTC
Earliest release date
2026-04-20

Files

Annotations

Alignment and QC

Length
11223 (94.9%)
# of SNPs
390
# of deleted bases
5
# of ambiguous bases
1
# of frame shifts
1
Frame shifts
E1:441(nt:11313)

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • T265C
  • T268A
  • T271C
  • T319C
  • T334C
  • C385T
  • A481G
  • A493C
  • G507A
  • A521G
  • T590G
  • T610C
  • C661T
  • T670C
  • T679C
  • C745T
  • A766G
  • A769G
Deletions
11308-11312
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

6K

  • 6K:I54V

C

  • C:F3Y
  • C:K63R
  • C:Q74R
  • C:H119Y

E1

  • E1:A98T
  • E1:K211T
  • E1:T288I
  • E1:A305T
  • E1:V322A
  • E1:A377V
  • E1:M407L

E2

  • E2:G57K
  • E2:I74T
  • E2:G79E
  • E2:A103T
  • E2:N160T
  • E2:A164T
  • E2:L181M
  • E2:S194G
  • E2:M267R
  • E2:S299N
  • E2:A344T
  • E2:I377V
  • E2:M384V

E3

  • E3:I23T
  • E3:K29R

nsP1

  • nsP1:R144K
  • nsP1:I149V
  • nsP1:L172V
  • nsP1:E234K
  • nsP1:M383L
  • nsP1:I384L
  • nsP1:T481I
  • nsP1:L507R

nsP2

  • nsP2:P352A
  • nsP2:H374Y
  • nsP2:M466L
  • nsP2:L494I
  • nsP2:A545S
  • nsP2:C642Y
  • nsP2:S643N
  • nsP2:A645V

nsP3

  • nsP3:S77L
  • nsP3:V175I
  • nsP3:P326S
  • nsP3:Q328P
  • nsP3:S330A
  • nsP3:V331A
  • nsP3:E333D
  • nsP3:K352E
  • nsP3:G374R
  • nsP3:I376T
  • nsP3:A382T
  • nsP3:L434P
  • nsP3:C435R
  • nsP3:S462N
  • nsP3:D518Y
  • nsP3:R524*

nsP4

  • nsP4:A43V
  • nsP4:P93S
  • nsP4:A481D
  • nsP4:Q500L
  • nsP4:I514T
  • nsP4:V555I
  • nsP4:V604I
Deletions
N/A
Insertions
N/A

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