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PPD_00T5ELA.1

Cuba/CHIKV-85118-1/2025-11-03
L. Pezzi, S. Sen, M. G. Guzman, M. Alvarez, S. Serrano, V. Colizza, N. Ayhan, G. Durand, G. Grard, X. de Lamballerie, R. Klitting, T. Canivez, M. Geulen, L. Bosio, M. Peden & A. Fontaine

Unite des Virus Emergents, Centre National de Reference des Arbovirus

Sample details

Collection date
2025-11-03
Sampling location
Cuba
Isolate name
CHIKV-85118-1

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-09-14
NCBI update date
2026-09-14

Host

Host

Submission details

Submission ID
PX907426.1
Submitting group
Date submitted
2026-10-02 14:52:02 UTC
Date released
2026-10-02 15:17:14 UTC
Earliest release date
2026-09-14

Files

Annotations

Alignment and QC

Length
11286 (86.4%)
# of SNPs
324
# of unknown bases
1072

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • T163C
  • T265C
  • T268C
  • T271C
  • G277A
  • T319C
  • T334C
  • C385T
  • A481G
  • A493C
  • A521G
  • T590G
  • T610C
  • C661T
  • T670C
  • T679C
  • C745T
  • A766G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

6K

  • 6K:I54V

C

  • C:F3Y
  • C:Q59R

E1

  • E1:K211T
  • E1:T288I
  • E1:A305T
  • E1:V322A
  • E1:A377V
  • E1:M407L

E2

  • E2:A103T
  • E2:N160T
  • E2:A164T
  • E2:L181M
  • E2:S194G
  • E2:M267R
  • E2:S299N
  • E2:A344T
  • E2:I377V
  • E2:M384V

nsP1

  • nsP1:I149V
  • nsP1:L172V
  • nsP1:E234K
  • nsP1:M383L
  • nsP1:I384L
  • nsP1:T481I
  • nsP1:L507R

nsP2

  • nsP2:P352A
  • nsP2:H374Y
  • nsP2:M466L
  • nsP2:L494I
  • nsP2:A545S
  • nsP2:C642Y
  • nsP2:S643N
  • nsP2:A645V

nsP3

  • nsP3:S77L
  • nsP3:V175I
  • nsP3:P326S
  • nsP3:Q328P
  • nsP3:S330A
  • nsP3:V331A
  • nsP3:K352E
  • nsP3:G374R
  • nsP3:I376T
  • nsP3:A382T
  • nsP3:L434P
  • nsP3:C435R
  • nsP3:S462N
  • nsP3:R524*

nsP4

  • nsP4:A43V
  • nsP4:P93S
  • nsP4:I111V
  • nsP4:A481D
  • nsP4:Q500L
  • nsP4:I514T
  • nsP4:V555I
  • nsP4:V604I
Deletions
N/A
Insertions
N/A

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