This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00T5EKC.1

Cuba/CHIKV-85153-1/2025-11-04
L. Pezzi, S. Sen, M. G. Guzman, M. Alvarez, S. Serrano, V. Colizza, N. Ayhan, G. Durand, G. Grard, X. de Lamballerie, R. Klitting, T. Canivez, M. Geulen, L. Bosio, M. Peden & A. Fontaine

Unite des Virus Emergents, Centre National de Reference des Arbovirus

Sample details

Collection date
2025-11-04
Sampling location
Cuba
Isolate name
CHIKV-85153-1

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-09-14
NCBI update date
2026-09-14

Host

Host

Submission details

Submission ID
PX907425.1
Submitting group
Date submitted
2026-10-02 14:52:02 UTC
Date released
2026-10-02 15:17:14 UTC
Earliest release date
2026-09-14

Files

Annotations

Alignment and QC

Length
11287 (95.4%)
# of SNPs
368

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • T163C
  • T265C
  • T268C
  • T271C
  • G277A
  • T319C
  • T334C
  • C385T
  • A481G
  • A493C
  • A521G
  • T590G
  • T610C
  • C661T
  • T670C
  • T679C
  • C745T
  • A766G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

6K

  • 6K:I54V

C

  • C:F3Y
  • C:K63R
  • C:Q74R
  • C:H119Y

E1

  • E1:K211T
  • E1:T288I
  • E1:A305T
  • E1:V322A
  • E1:R366H
  • E1:A377V
  • E1:M407L

E2

  • E2:G57K
  • E2:I74T
  • E2:G79E
  • E2:A103T
  • E2:N160T
  • E2:A164T
  • E2:L181M
  • E2:S194G
  • E2:M267R
  • E2:S299N
  • E2:A344T
  • E2:I377V
  • E2:M384V

E3

  • E3:I23T
  • E3:K29R

nsP1

  • nsP1:I149V
  • nsP1:L172V
  • nsP1:E234K
  • nsP1:M383L
  • nsP1:I384L
  • nsP1:T481I
  • nsP1:L507R

nsP2

  • nsP2:P352A
  • nsP2:H374Y
  • nsP2:M466L
  • nsP2:L494I
  • nsP2:A545S
  • nsP2:C642Y
  • nsP2:S643N
  • nsP2:A645V

nsP3

  • nsP3:S77L
  • nsP3:V175I
  • nsP3:P326S
  • nsP3:Q328P
  • nsP3:S330A
  • nsP3:V331A
  • nsP3:K352E
  • nsP3:G374R
  • nsP3:I376T
  • nsP3:A382T
  • nsP3:L434P
  • nsP3:C435R
  • nsP3:S462N
  • nsP3:R524*

nsP4

  • nsP4:A43V
  • nsP4:P93S
  • nsP4:I111V
  • nsP4:A481D
  • nsP4:Q500L
  • nsP4:I514T
  • nsP4:V555I
  • nsP4:V604I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue