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PPD_00T2U9R.1

China/CHIKV_Guangdong_004_2025/2025-07-31
C. Qin, C. Yan, P. Li, X. Huang, M. Sun, T. Chen, M. He, H. Zhou & Y. Liao

Institute of Systems Medicine, Chinese Academy of Medical Sciences, Suzhou Institute of Systems Medicine

Sample details

Collection date
2025-07-31
Sampling location
China (Guangdong)
Isolate name
CHIKV_Guangdong_004_2025

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-06-11
NCBI update date
2026-06-11

Host

Host

Submission details

Submission ID
PX666716.1
Submitting group
Date submitted
2026-10-02 14:51:33 UTC
Date released
2026-10-02 15:09:14 UTC
Earliest release date
2026-06-11

Files

Annotations

Alignment and QC

Length
12032 (100%)
# of SNPs
445
# of inserted bases
217
# of deleted bases
11

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • C161T
  • G202A
  • T268C
  • T271C
  • A280T
  • C301A
  • T319C
  • T334C
  • A360G
  • G421A
  • A469G
  • A493C
  • G542A
  • T590G
  • T610C
  • C655T
  • C661T
  • T670C
Deletions
11393-11399, 11408, 11475, 11476, 11629
Insertions
ins_11424:GGTG, ins_11438:AAGGGCCGAATAACCCCTGAATAG, ins_11446:TATGAAAATC, ins_11454:TCAT, ins_11596:ATATGAAGGTATATGTGTCCCCTAGGAGACACACTGTACATAGCTAATAATCTATGGGCATACGTGTCCCCTGGGAGACACATTGCATGTAGGTGATAAGTATAGATCAAAGGGCCGAATAACCCCTGAATAGTAACAAAATATGAAAATCAATAAAAATCATAAAATAGAAAAC

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

6K

  • 6K:I54V
  • 6K:S60N

C

  • C:K63R
  • C:K122R
  • C:T143A

E1

  • E1:N9S
  • E1:T37I
  • E1:A226V
  • E1:S250P
  • E1:M269V
  • E1:I317V
  • E1:V322A
  • E1:K324R
  • E1:G348E
  • E1:V399I

E2

  • E2:G57K
  • E2:I74T
  • E2:G79E
  • E2:V85A
  • E2:S118G
  • E2:K149R
  • E2:N160T
  • E2:A164T
  • E2:L181M
  • E2:S194G
  • E2:L210Q
  • E2:I211T
  • E2:V222I
  • E2:A227V
  • E2:A246D
  • E2:M267R
  • E2:Q282K
  • E2:S299N
  • E2:A344T
  • E2:I415L

E3

  • E3:I23T

nsP1

  • nsP1:P29S
  • nsP1:D75E
  • nsP1:N95S
  • nsP1:V156I
  • nsP1:L172V
  • nsP1:E234K
  • nsP1:M383L
  • nsP1:I384L
  • nsP1:T481I
  • nsP1:A487T
  • nsP1:Q488K
  • nsP1:E498K
  • nsP1:L507R

nsP2

  • nsP2:R34C
  • nsP2:H374Y
  • nsP2:N495S
  • nsP2:V516I
  • nsP2:P562H
  • nsP2:I581V
  • nsP2:A604V
  • nsP2:C642Y
  • nsP2:S643N

nsP3

  • nsP3:V19A
  • nsP3:T122I
  • nsP3:V175I
  • nsP3:A196V
  • nsP3:P326S
  • nsP3:Q328P
  • nsP3:V331A
  • nsP3:T337A
  • nsP3:T338M
  • nsP3:Q344R
  • nsP3:K352E
  • nsP3:I376T
  • nsP3:T378M
  • nsP3:A382T
  • nsP3:V399I
  • nsP3:L410Q
  • nsP3:Q439R
  • nsP3:M449T

nsP4

  • nsP4:Q46H
  • nsP4:T101V
  • nsP4:K230N
  • nsP4:V497A
  • nsP4:Q500L
  • nsP4:I514T
  • nsP4:V555I
  • nsP4:V604I
Deletions
N/A
Insertions
N/A

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