This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00T2U09.1

Sri_Lanka/barcode87_run3/2025-07-11
T. T. P. Jayadas, M. De Silva, Y. Liao, B. Senadheera, L. Gomes, H. Kuruppu, R. Rathnapriya, F. Bary, S. Madusanka, A. Wijewickrama, D. Idampitiya, S. Manilgama, R. de Alwis, T. Lam, C. Jeewandara & G. N. Malavige

Institute of Allergology and Immunology

Sample details

Collection date
2025-07-11
Sampling location
Sri Lanka
Isolate name
barcode87_run3

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
II-ECSA

INSDC

INSDC accession
NCBI release date
2026-02-09
NCBI update date
2026-02-09

Host

Host

Submission details

Submission ID
PX661570.1
Submitting group
Date submitted
2026-10-02 14:51:33 UTC
Date released
2026-10-02 15:09:14 UTC
Earliest release date
2026-02-09

Files

Annotations

Alignment and QC

Length
11701 (98.9%)
# of SNPs
392

Nucleotide mutations

Mutations called relative to the NC_004162.2 reference

Substitutions
  • T163A
  • T244C
  • T268C
  • T271C
  • T319C
  • A337G
  • C358T
  • T364C
  • C409T
  • C448A
  • C459A
  • T490C
  • A493C
  • G520T
  • A575G
  • T590G
  • T610C
  • T670C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_004162.2 reference

Substitutions

6K

  • 6K:V8I
  • 6K:I54V

C

  • C:P23S
  • C:V27I
  • C:K63R

E1

  • E1:I55V
  • E1:K211E
  • E1:D284E
  • E1:V322A

E2

  • E2:G57K
  • E2:I74M
  • E2:G79E
  • E2:N160T
  • E2:A164T
  • E2:L181M
  • E2:S194G
  • E2:I211T
  • E2:V264A
  • E2:M267R
  • E2:S299N
  • E2:T312M
  • E2:A344T
  • E2:S375T
  • E2:V386A
  • E2:M390I
  • E2:I415V
  • E2:I418V

E3

  • E3:A3V
  • E3:I23T

nsP1

  • nsP1:T128K
  • nsP1:I167V
  • nsP1:L172V
  • nsP1:E234K
  • nsP1:M383L
  • nsP1:I384L
  • nsP1:T481I
  • nsP1:Q488R
  • nsP1:L507R

nsP2

  • nsP2:S54N
  • nsP2:H374Y
  • nsP2:C642Y
  • nsP2:S643N
  • nsP2:A793V

nsP3

  • nsP3:I171V
  • nsP3:V175I
  • nsP3:Y217H
  • nsP3:P326S
  • nsP3:V331A
  • nsP3:T337I
  • nsP3:K352E
  • nsP3:A382I
  • nsP3:L461P
  • nsP3:S462N
  • nsP3:P471S
  • nsP3:R524*

nsP4

  • nsP4:V21A
  • nsP4:T75A
  • nsP4:T101I
  • nsP4:P110S
  • nsP4:A243S
  • nsP4:T254A
  • nsP4:Q500L
  • nsP4:I514T
  • nsP4:V555I
  • nsP4:V604I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue