This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Organisms
Chikungunya Virus
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Andes Virus [Hantavirus]
Chikungunya Virus
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Bundibugyo
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
Zika Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
Chikungunya Virus
|
Browse data
Submit sequences
Resources
Select organism section
Browse data
Submit sequences
Resources
PPD_00T2S27.1
Download
Download FASTA
Download metadata TSV
China/HP_002/2025-08-01
Y. Zhang
Huangpu District Center for Disease Control and Prevention, Department of Laboratory Technology
Sample details
Collection date
2025-08-01
Sampling location
China
Isolate name
HP_002
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
II-ECSA
INSDC
INSDC accession
PX308570.1
NCBI release date
2026-01-06
NCBI update date
2026-01-06
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PX308570.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-02 14:51:33 UTC
Date released
2026-10-02 15:09:14 UTC
Earliest release date
2026-01-06
Files
Annotations
PPD_00T2S27.1.embl
Alignment and QC
Length
11237 (95%)
# of SNPs
404
Nucleotide mutations
Mutations called relative to the
NC_004162.2
reference
Substitutions
C
161
T
G
202
A
T
268
C
T
271
C
A
280
T
C
301
A
T
319
C
T
334
C
A
360
G
G
421
A
A
469
G
A
493
C
G
542
A
T
590
G
T
610
C
C
655
T
C
661
T
T
670
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_004162.2
reference
Substitutions
6K
6K:
I
54
V
6K:
S
60
N
C
C:
K
63
R
C:
K
122
R
C:
T
143
A
E1
E1:
N
9
S
E1:
T
37
I
E1:
V
220
A
E1:
A
226
V
E1:
S
250
P
E1:
M
269
V
E1:
I
317
V
E1:
V
322
A
E1:
K
324
R
E1:
G
348
E
E1:
V
399
I
E2
E2:
G
57
K
E2:
I
74
T
E2:
G
79
E
E2:
V
85
A
E2:
S
118
G
E2:
K
149
R
E2:
N
160
T
E2:
A
164
T
E2:
L
181
M
E2:
S
194
G
E2:
L
210
Q
E2:
I
211
T
E2:
V
222
I
E2:
A
227
V
E2:
A
246
D
E2:
M
267
R
E2:
Q
282
K
E2:
S
299
N
E2:
A
344
T
E2:
I
415
L
E3
E3:
I
23
T
nsP1
nsP1:
P
29
S
nsP1:
D
75
E
nsP1:
N
95
S
nsP1:
V
156
I
nsP1:
L
172
V
nsP1:
E
234
K
nsP1:
M
383
L
nsP1:
I
384
L
nsP1:
T
481
I
nsP1:
A
487
T
nsP1:
Q
488
K
nsP1:
E
498
K
nsP1:
L
507
R
nsP2
nsP2:
R
34
C
nsP2:
H
374
Y
nsP2:
N
495
S
nsP2:
V
516
I
nsP2:
P
562
H
nsP2:
I
581
V
nsP2:
A
604
V
nsP2:
C
642
Y
nsP2:
S
643
N
nsP3
nsP3:
V
19
A
nsP3:
T
122
I
nsP3:
V
175
I
nsP3:
A
196
V
nsP3:
P
326
S
nsP3:
Q
328
P
nsP3:
V
331
A
nsP3:
T
337
A
nsP3:
T
338
M
nsP3:
Q
344
R
nsP3:
K
352
E
nsP3:
I
376
T
nsP3:
T
378
M
nsP3:
A
382
T
nsP3:
V
399
I
nsP3:
L
410
Q
nsP3:
Q
439
R
nsP3:
M
449
T
Show more
nsP4
nsP4:
Q
46
H
nsP4:
T
101
V
nsP4:
K
230
N
nsP4:
V
497
A
nsP4:
Q
500
L
nsP4:
I
514
T
nsP4:
V
555
I
nsP4:
V
604
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue