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PPD_00SUSLL.1
Download
Download FASTA
Download metadata TSV
Chile/1057/2023-02-16
J. Angulo,
H. Ramos,
E. Fuentes-Luppichini &
M. Ferres
Pontificia Universidad Catolica de Chile, Area de biomedicina
Sample details
Collection date
2023-02-16
Sampling location
Chile
Isolate name
1057
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession M
PX095401.1
INSDC accession S
PX101713.1
NCBI release date
2026-09-30
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PX095401.1.M/PX101713.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-01 08:01:03 UTC
Date released
2026-10-01 08:01:56 UTC
Earliest release date
2026-09-30
Alignment and QC
Length M
3532 (96.2%)
# of SNPs M
491
Length S
1851 (98.8%)
# of SNPs S
195
# of inserted bases S
6
# of deleted bases S
4
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
M
T
66
C
T
74
C
T
75
A
G
86
A
A
89
G
T
90
G
G
93
A
C
111
T
G
114
A
G
126
A
A
132
G
G
144
A
C
147
T
T
168
A
C
171
T
C
180
G
A
184
T
C
190
T
Show more
S
G
63
A
G
66
A
G
129
A
G
133
A
A
135
G
C
156
A
C
172
T
T
225
C
A
234
G
A
240
G
A
258
G
T
262
C
C
310
T
A
318
G
A
321
G
G
330
A
C
345
T
T
354
C
Show more
Deletions
S
1453, 1571, 1572, 1650
Insertions
S
ins_1536:G, ins_1555:A, ins_1631:TTT, ins_1794:A
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
8
A
GPC:
C
12
Y
GPC:
Y
13
W
GPC:
T
45
S
GPC:
A
74
N
GPC:
F
78
Y
GPC:
V
107
I
GPC:
I
114
V
GPC:
V
126
I
GPC:
L
277
I
GPC:
H
294
Y
GPC:
V
346
I
GPC:
T
353
V
GPC:
V
499
I
GPC:
T
523
N
GPC:
I
537
V
GPC:
I
579
M
GPC:
G
598
A
Show more
Gc
Gc:
M
5
L
Gc:
I
19
V
Gc:
S
52
A
Gc:
V
254
I
Gc:
A
329
S
Gc:
T
345
S
Gc:
T
372
A
Gc:
L
408
I
Gc:
V
465
I
Gc:
L
469
F
Gc:
V
476
I
Gn
Gn:
V
8
A
Gn:
C
12
Y
Gn:
Y
13
W
Gn:
T
45
S
Gn:
A
74
N
Gn:
F
78
Y
Gn:
V
107
I
Gn:
I
114
V
Gn:
V
126
I
Gn:
L
277
I
Gn:
H
294
Y
Gn:
V
346
I
Gn:
T
353
V
Gn:
V
499
I
Gn:
T
523
N
Gn:
I
537
V
Gn:
I
579
M
Gn:
G
598
A
Gn:
I
644
L
Gn:
V
645
I
N
N:
A
31
T
N:
D
38
E
N:
A
256
S
N:
I
281
V
NSs
NSs:
R
3
K
NSs:
Q
5
R
NSs:
T
12
K
NSs:
L
35
S
NSs:
N
38
S
NSs:
Q
40
R
NSs:
K
46
R
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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