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PPD_00SUS1R.1
Download
Download FASTA
Download metadata TSV
Chile/133/2023-11-11
J. Angulo,
H. Ramos,
E. Fuentes-Luppichini &
M. Ferres
Pontificia Universidad Catolica de Chile, Area de biomedicina
Sample details
Collection date
2023-11-11
Sampling location
Chile (Region Metropolitana de Santiago)
Isolate name
133
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PX069905.1
INSDC accession M
PX069892.1
INSDC accession S
PX069874.1
NCBI release date
2026-09-30
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PX069905.1.L/PX069892.1.M/PX069874.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-01 08:01:03 UTC
Date released
2026-10-01 08:01:56 UTC
Earliest release date
2026-09-30
Alignment and QC
Length L
6555 (99.9%)
# of SNPs L
878
Length M
3658 (99.7%)
# of SNPs M
485
# of deleted bases M
1
Length S
1859 (99.3%)
# of SNPs S
187
# of inserted bases S
2
# of deleted bases S
1
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
L
T
47
C
G
71
A
C
74
G
T
77
C
A
95
G
A
116
C
G
119
T
C
128
T
C
131
T
C
137
T
A
140
G
C
146
T
G
149
T
A
167
G
T
182
C
A
198
C
T
216
C
C
219
T
Show more
M
G
45
A
T
72
C
T
74
C
T
75
A
A
89
G
T
90
G
G
93
A
C
111
T
G
114
A
G
126
A
C
159
A
T
162
C
T
168
A
C
171
T
C
174
T
T
177
C
C
180
G
A
184
T
Show more
S
G
63
A
G
66
A
C
72
T
G
133
A
A
135
G
C
156
A
C
172
T
T
225
C
A
234
G
A
240
G
A
258
G
T
262
C
C
310
T
A
318
G
A
321
G
C
328
T
T
354
C
T
367
C
Show more
Deletions
M
3570
S
1453
Insertions
S
ins_1539:G, ins_1790:A
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
8
A
GPC:
Y
13
W
GPC:
T
45
S
GPC:
A
74
N
GPC:
F
78
Y
GPC:
L
277
I
GPC:
H
294
Y
GPC:
V
346
I
GPC:
T
353
V
GPC:
V
499
I
GPC:
T
523
S
GPC:
I
537
V
GPC:
I
579
M
GPC:
G
598
S
GPC:
K
615
R
GPC:
I
644
L
GPC:
V
645
I
GPC:
M
656
L
Show more
Gc
Gc:
M
5
L
Gc:
I
19
V
Gc:
S
52
A
Gc:
A
329
S
Gc:
T
345
S
Gc:
T
372
A
Gc:
L
408
I
Gc:
V
465
I
Gc:
L
469
F
Gc:
V
476
I
Gn
Gn:
V
8
A
Gn:
Y
13
W
Gn:
T
45
S
Gn:
A
74
N
Gn:
F
78
Y
Gn:
L
277
I
Gn:
H
294
Y
Gn:
V
346
I
Gn:
T
353
V
Gn:
V
499
I
Gn:
T
523
S
Gn:
I
537
V
Gn:
I
579
M
Gn:
G
598
S
Gn:
K
615
R
Gn:
I
644
L
Gn:
V
645
I
N
N:
A
31
T
N:
D
38
E
N:
A
256
S
N:
I
281
V
NSs
NSs:
Q
5
R
NSs:
T
12
K
NSs:
L
35
S
NSs:
N
38
S
NSs:
Q
40
R
NSs:
K
46
R
RdRp
RdRp:
D
13
E
RdRp:
I
70
V
RdRp:
V
135
I
RdRp:
T
141
I
RdRp:
R
144
K
RdRp:
S
273
N
RdRp:
L
277
V
RdRp:
R
286
W
RdRp:
I
321
L
RdRp:
S
338
A
RdRp:
R
346
K
RdRp:
L
371
I
RdRp:
I
402
V
RdRp:
I
435
V
RdRp:
A
491
S
RdRp:
I
510
V
RdRp:
V
614
M
RdRp:
H
693
Y
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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