This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00SURV3.1

Chile/73D/2017-03-20
J. Angulo, H. Ramos, E. Fuentes-Luppichini & M. Ferres

Pontificia Universidad Catolica de Chile, Area de biomedicina

Sample details

Collection date
2017-03-20
Sampling location
Chile
Isolate name
73D

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

INSDC accession M
INSDC accession S
NCBI release date
2026-09-30

Host

Host

Submission details

Submission ID
PX069896.1.M/PX069866.1.S
Submitting group
Date submitted
2026-10-01 08:01:03 UTC
Date released
2026-10-01 08:01:56 UTC
Earliest release date
2026-09-30

Alignment and QC

Length M
3656 (99.6%)
# of SNPs M
210
Length S
1855 (99%)
# of SNPs S
126
# of inserted bases S
5
# of deleted bases S
2

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

M

  • G43A
  • C111T
  • G114A
  • C147T
  • C174T
  • C190T
  • A192G
  • C231T
  • C243T
  • A264G
  • C285T
  • A297G
  • G339A
  • C342T
  • T345C
  • A360G
  • T363C
  • T387C

S

  • G63A
  • G66A
  • T117C
  • G120A
  • A135G
  • G150A
  • A219G
  • T225C
  • T244C
  • T306C
  • A312G
  • G315A
  • A318G
  • T357C
  • C417T
  • C444A
  • C453T
  • T454C
Deletions

S

1443, 1573
Insertions

S

ins_1483:C, ins_1555:A, ins_1631:TT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:H294Y
  • GPC:V346I
  • GPC:T353V
  • GPC:V435I
  • GPC:I537V
  • GPC:T1023A

Gc

  • Gc:T372A

Gn

  • Gn:H294Y
  • Gn:V346I
  • Gn:T353V
  • Gn:V435I
  • Gn:I537V

N

  • N:A253V

NSs

  • NSs:Q5R
  • NSs:R10Q
  • NSs:E33G
  • NSs:L35S
  • NSs:I62T
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue