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PPD_00SSD26.1
Download
Download FASTA
Download metadata TSV
Pakistan/PPD_00SSD26.1/2024-05
S. Aiman,
A. Zia,
M. U. Khattak,
Y. M. Yousafzai,
M. Umair,
M. Salman,
R. Hakim,
Z. Jamal,
H. Khan &
A. Islam
Khyber Medical University, Institute of Pathology and Diagnostic Medicine (IPDM), Microbiology
Sample details
Collection date
2024-05
Sampling location
Pakistan (Peshawar)
Isolate name
CCHFV/PHRL/140
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PZ816504.1
INSDC accession M
PZ816503.1
NCBI release date
2026-09-07
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ816504.1.L/PZ816503.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-08 08:38:47 UTC
Date released
2026-09-08 08:39:27 UTC
Earliest release date
2026-09-07
Alignment and QC
Length M
5284 (90.1%)
# of SNPs M
584
# of inserted bases M
1
# of unknown bases M
448
Length L
12099 (94.1%)
# of SNPs L
1551
# of inserted bases L
19
# of deleted bases L
7
# of unknown bases L
698
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
T
49
C
A
53
G
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M
A
69
G
C
82
T
C
85
T
T
86
C
A
107
G
A
117
G
C
119
T
C
120
T
T
122
C
C
126
T
A
128
G
G
131
A
T
137
C
G
143
A
A
146
G
G
147
A
C
153
A
T
155
C
Show more
Deletions
L
12028-12034
Insertions
L
ins_58:T, ins_11917:CA, ins_12053:CTAC, ins_12086:CTACTATTCCAC
M
ins_5238:N
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
H
21
N
GPC:
S
23
P
GPC:
E
26
G
GPC:
R
28
E
GPC:
K
31
N
GPC:
D
33
H
GPC:
T
34
V
GPC:
G
39
D
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
S
53
T
GPC:
I
54
V
GPC:
T
55
A
GPC:
L
56
P
Show more
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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