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PPD_00SR1ND.1

India/S1DVG01C09/2024-06
G. R. Deshpande, G. N. Sapkal, A. Salunke, R. Gunjikar, N. Tadkalkar, P. Shinde, N. Daga, M. Gopale, A. Ramdasi, S. Hundekar, K. Lole, R. R. Roy, J. A. Jenish, R. Srivastava, S. Parmar, P. Pawara, K. Jarande, S. Vidhate, K. Khutwad, K. S. Lole & R. S. Gunjikar

ICMR-NATIONAL INSTITUTE OF VIROLOGY, DVG

Sample details

Collection date
2024-06
Sampling location
India (Maharashtra,Pune)
Isolate name
S1DVG01C09

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2025-09-13
NCBI update date
2025-09-13

Host

Host

Submission details

Submission ID
PX287204.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:03:29 UTC
Earliest release date
2025-09-13

Alignment and QC

Length
10407 (96.1%)
# of SNPs
194
# of unknown bases
25

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • A150C
  • T188C
  • A254G
  • T299C
  • T398C
  • G423A
  • A523G
  • T558C
  • G653A
  • G689A
  • T719C
  • T773C
  • T779C
  • A803G
  • C848T
  • A884G
  • A953G
  • A1175G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

C

  • C:N15H

E

  • E:A280T
  • E:K419R

M

  • M:I67M

NS1

  • NS1:V84I
  • NS1:E146K
  • NS1:L154I
  • NS1:A233T
  • NS1:V349M

NS3

  • NS3:D122E
  • NS3:G144W

NS4B

  • NS4B:S14A
  • NS4B:I240T

NS5

  • NS5:Y74H
  • NS5:V114M
  • NS5:I322V

ancC

  • ancC:N15H
  • ancC:A106T

pr

  • pr:N17S

prM

  • prM:N17S
  • prM:I160M
Deletions
N/A
Insertions
N/A

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