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PPD_00SR1EW.1

Singapore/ZKA-24-021/2024-07
G. J. Y. Ngan, L. Cui & R. T. P. Lin

National Centre for Infectious Diseases, National Public Health Laboratory

Sample details

Collection date
2024-07
Sampling location
Singapore
Isolate name
ZKA-24-021

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2026-07-01
NCBI update date
2026-07-01

Host

Host

Submission details

Submission ID
PV012995.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:03:29 UTC
Earliest release date
2026-07-01

Alignment and QC

Length
10272 (95%)
# of SNPs
187
# of unknown bases
1

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T146A
  • T227C
  • G242A
  • C248T
  • A254G
  • A272G
  • A347G
  • T349G
  • A352G
  • T357A
  • A416G
  • T434C
  • A523G
  • T558C
  • T578C
  • T746C
  • T755C
  • A803G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

C

  • C:I80M
  • C:I81R
  • C:K82R
  • C:F84I

M

  • M:V65I

NS1

  • NS1:V93I
  • NS1:T139I
  • NS1:E146K
  • NS1:K191E
  • NS1:E203G
  • NS1:H216P
  • NS1:L217P
  • NS1:E219K
  • NS1:K221F
  • NS1:T222P
  • NS1:A233T
  • NS1:V349M

NS2B

  • NS2B:N70T

NS3

  • NS3:Q74K
  • NS3:S356P
  • NS3:H584Y

NS4B

  • NS4B:M144L
  • NS4B:Y239H
  • NS4B:I240T

NS5

  • NS5:V114M
  • NS5:T646A
  • NS5:D824V

ancC

  • ancC:I80M
  • ancC:I81R
  • ancC:K82R
  • ancC:F84I

pr

  • pr:N17S

prM

  • prM:N17S
  • prM:V158I
Deletions
N/A
Insertions
N/A

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