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PPD_00SR1DY.1

Singapore/ZKA-23-012/2023-05
G. J. Y. Ngan, L. Cui & R. T. P. Lin

National Centre for Infectious Diseases, National Public Health Laboratory

Sample details

Collection date
2023-05
Sampling location
Singapore
Isolate name
ZKA-23-012

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2026-07-01
NCBI update date
2026-07-01

Host

Host

Submission details

Submission ID
PV012994.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:03:29 UTC
Earliest release date
2026-07-01

Alignment and QC

Length
10272 (95%)
# of SNPs
292

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T227C
  • A254G
  • T257A
  • A331G
  • C377T
  • T434C
  • T446C
  • G455C
  • T467C
  • C475T
  • A523G
  • A540G
  • T558C
  • T578C
  • G584A
  • A599G
  • C639T
  • G653A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

C

  • C:K75R

E

  • E:M473V
  • E:M487T

NS1

  • NS1:V46I
  • NS1:E146K
  • NS1:A233T
  • NS1:V349M

NS2A

  • NS2A:H5Y
  • NS2A:S35V

NS2B

  • NS2B:V67I

NS3

  • NS3:H400N
  • NS3:T566M
  • NS3:H584Y

NS4B

  • NS4B:I98M
  • NS4B:I240T

NS5

  • NS5:V114M
  • NS5:R391Q
  • NS5:S642P
  • NS5:V872M

ancC

  • ancC:K75R

pr

  • pr:A1V
  • pr:N17S
  • pr:I23V

prM

  • prM:A1V
  • prM:N17S
  • prM:I23V
Deletions
N/A
Insertions
N/A

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