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PPD_00SQZ7E.1
Download
Download FASTA
Download metadata TSV
Senegal/432622/2023-11-02
M. A. Barry,
I. Dieng,
S. N. Sagne,
M. H. D. Ndione,
S. Sankhe,
O. Faye,
C. Loucoubar,
M. M. Diagne &
G. Fall
Institut Pasteur de Dakar, Virology
Sample details
Collection date
2023-11-02
Sampling location
Senegal
Isolate name
432622
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
African
INSDC
INSDC accession
PQ432999.1
NCBI release date
2025-10-04
NCBI update date
2025-10-04
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PQ432999.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:03:29 UTC
Earliest release date
2025-10-04
Alignment and QC
Length
10262 (94.9%)
# of SNPs
1218
Nucleotide mutations
Mutations called relative to the
NC_035889.1
reference
Substitutions
A
122
G
A
124
G
G
179
A
G
181
A
T
188
G
C
194
T
A
209
G
T
227
C
G
233
A
G
242
A
C
248
T
A
254
G
T
257
A
T
266
C
T
267
C
C
275
T
G
278
A
T
299
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_035889.1
reference
Substitutions
C
C:
K
6
R
C:
S
25
N
C:
F
27
L
C:
K
101
R
E
E:
A
120
T
E:
I
169
V
E:
S
285
F
E:
I
317
V
E:
E
393
D
E:
A
437
V
E:
L
438
F
E:
M
473
V
E:
M
487
T
E:
L
495
M
M
M:
R
31
K
M:
A
45
V
M:
A
47
V
M:
I
49
M
NS1
NS1:
D
52
E
NS1:
R
69
K
NS1:
S
92
P
NS1:
E
146
K
NS1:
V
162
I
NS1:
V
194
A
NS1:
K
213
R
NS1:
A
233
T
NS1:
I
236
V
NS1:
M
264
V
NS1:
V
349
M
NS2A
NS2A:
I
34
M
NS2A:
I
45
V
NS2A:
A
58
V
NS2A:
I
80
V
NS2A:
D
124
E
NS2A:
I
129
V
NS2A:
V
143
A
NS2A:
T
151
A
NS2A:
S
190
G
NS2A:
L
208
I
NS2B
NS2B:
K
47
R
NS2B:
D
89
E
NS2B:
T
105
A
NS3
NS3:
S
56
A
NS3:
H
92
L
NS3:
R
169
K
NS3:
T
174
A
NS3:
K
185
R
NS3:
T
215
K
NS3:
V
220
A
NS3:
V
360
I
NS3:
H
400
N
NS3:
V
407
I
NS3:
L
472
M
NS3:
R
583
K
NS3:
H
584
Y
NS4A
NS4A:
F
4
L
NS4A:
E
8
D
NS4B
NS4B:
L
13
I
NS4B:
S
14
A
NS4B:
R
20
K
NS4B:
A
24
T
NS4B:
I
26
M
NS4B:
F
49
L
NS4B:
I
184
V
NS4B:
S
186
L
NS4B:
I
240
T
NS5
NS5:
Y
74
H
NS5:
I
78
V
NS5:
K
101
R
NS5:
V
114
M
NS5:
A
159
T
NS5:
L
195
M
NS5:
Y
202
H
NS5:
T
229
I
NS5:
V
267
A
NS5:
N
280
R
NS5:
S
287
N
NS5:
I
322
V
NS5:
H
389
R
NS5:
Q
449
H
NS5:
V
519
I
NS5:
S
524
N
NS5:
I
526
A
NS5:
R
545
K
Show more
ancC
ancC:
K
6
R
ancC:
S
25
N
ancC:
F
27
L
ancC:
K
101
R
ancC:
V
110
I
pr
pr:
V
3
I
pr:
N
17
S
pr:
E
21
K
pr:
P
26
A
pr:
M
31
V
pr:
Y
35
H
pr:
I
36
V
prM
prM:
V
3
I
prM:
N
17
S
prM:
E
21
K
prM:
P
26
A
prM:
M
31
V
prM:
Y
35
H
prM:
I
36
V
prM:
R
124
K
prM:
A
138
V
prM:
A
140
V
prM:
I
142
M
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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