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PPD_00SQZ2Q.1

Bangladesh/BD-104/2023-11-14
M. Rahman, M. M. Hossain, A. Hasan, M. F. Zamil, A. T. Trina, D. Ahmed, T. Jabin, S. Alam, N. Begum & M. S. Alam

icddr, b, iGC

Sample details

Collection date
2023-11-14
Sampling location
Bangladesh (Dhaka)
Isolate name
BD-104

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2024-08-27
NCBI update date
2024-08-27

Host

Host

Submission details

Submission ID
PQ203661.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:03:29 UTC
Earliest release date
2024-08-27

Alignment and QC

Length
10636 (98.5%)
# of SNPs
175
# of inserted bases
1
# of deleted bases
7
# of frame shifts
1
Frame shifts
NS3:169-175(nt:5116-5138)

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T227C
  • A254G
  • A272G
  • A429G
  • C449T
  • T506C
  • A523G
  • T558C
  • T593C
  • C665T
  • G1004A
  • A1175G
  • C1226T
  • T1241C
  • C1304A
  • G1463A
  • A1464G
  • T1571C
Deletions
1433-1435, 1443-1445, 5115
Insertions
ins_5138:G

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

E

  • E:N163D

NS1

  • NS1:E146K
  • NS1:A233T
  • NS1:V349M

NS2A

  • NS2A:A58T
  • NS2A:V143A

NS2B

  • NS2B:M28I

NS3

  • NS3:V126G
  • NS3:T215K
  • NS3:H584Y

NS4B

  • NS4B:I240T

NS5

  • NS5:K28Q
  • NS5:V114M
  • NS5:V267A
  • NS5:N280D
  • NS5:I322M
  • NS5:V394I
  • NS5:D703N
  • NS5:L766H

ancC

  • ancC:T108A

pr

  • pr:N17S

prM

  • prM:N17S
Deletions

E

E:153, E:156

NS3

NS3:168
Insertions
N/A

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