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PPD_00SQYJS.1

Pakistan/UWARN_02_G005/2021-11-17
K. Sawatzki, N. T. Iqbal, K. Ahmed, J. Cornelius, J. C. Tisoncik-Go, W. Jr. Van Voorhis & M. Jr. Gale

University of Washington, Immunology

Sample details

Collection date
2021-11-17
Sampling location
Pakistan
Isolate name
UWARN_02_G005

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2025-03-01
NCBI update date
2025-03-01

Host

Host

Submission details

Submission ID
PQ066186.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:03:29 UTC
Earliest release date
2025-03-01

Alignment and QC

Length
10689 (95.3%)
# of SNPs
27
# of inserted bases
1
# of unknown bases
386

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • A254G
  • A693G
  • T798C
  • C836T
  • C1616T
  • C2375T
  • T2555C
  • G2681A
  • T2724C
  • G2925A
  • G3332A
  • C3731T
  • A5438G
  • C5657A
  • T5937C
  • C6320T
  • A6373G
  • T6959C
Deletions
N/A
Insertions
ins_10453:N

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

M

  • M:S16P

NS1

  • NS1:E146K

NS3

  • NS3:K587R

pr

  • pr:T74A

prM

  • prM:T74A
  • prM:S109P
Deletions
N/A
Insertions
N/A

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