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PPD_00SQYHU.1

Seychelles/PD5588109/2024-04-20
A. Sinigaglia, L. Squarzon, E. Dal Molin, L. Martignago, C. Lucca, S. Vogiatzis, S. Panese, M. Pacenti, L. Barzon, E. Dal molin & B. Luisa

University of Padova, Department of Molecular Medicine

Sample details

Collection date
2024-04-20
Sampling location
Seychelles
Isolate name
PD5588109

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2024-11-27
NCBI update date
2024-11-27

Host

Host

Submission details

Submission ID
PQ008648.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:03:29 UTC
Earliest release date
2024-11-27

Alignment and QC

Length
10633 (98.4%)
# of SNPs
206
# of inserted bases
1

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T188C
  • A254G
  • T299C
  • G423A
  • C482T
  • T510C
  • A523G
  • T558C
  • G584A
  • G653A
  • T719C
  • T773C
  • A803G
  • T837C
  • T872C
  • A884G
  • A914G
  • A953G
Deletions
N/A
Insertions
ins_10662:C

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

E

  • E:T179I
  • E:A280T

M

  • M:I67M

NS1

  • NS1:V84I
  • NS1:E146K
  • NS1:L154I
  • NS1:A233T
  • NS1:V349M

NS2A

  • NS2A:G189A

NS2B

  • NS2B:S1T
  • NS2B:K23N

NS4B

  • NS4B:I240T

NS5

  • NS5:Y74H
  • NS5:V114M
  • NS5:D131N
  • NS5:M244R
  • NS5:I282V
  • NS5:I322V
  • NS5:R445K
  • NS5:Q600H
  • NS5:R601W
  • NS5:Q605L
  • NS5:I622S
  • NS5:Q634R
  • NS5:L718I

ancC

  • ancC:A106T

pr

  • pr:Y13H
  • pr:N17S

prM

  • prM:Y13H
  • prM:N17S
  • prM:I160M
Deletions
N/A
Insertions
N/A

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