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PPD_00SQTCA.1

France/CNR62136/2022-03-29
S. Marquine, D. Guillaume, T. Canivez, G. Piorkowski, X. De Lamballerie, C. Badaut, G. Grard & R. Klitting

Institut National de la Sante et de la Recherche Medicale, Centre National de Reference des Arbovirus

Sample details

Collection date
2022-03-29
Sampling location
France
Isolate name
CNR62136

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2023-12-03
NCBI update date
2023-12-03

Host

Host

Submission details

Submission ID
OQ734448.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:02:26 UTC
Earliest release date
2023-12-03

Alignment and QC

Length
10172 (93.9%)
# of SNPs
119
# of unknown bases
24

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • A254G
  • A523G
  • T558C
  • T578C
  • G653A
  • T746C
  • C878T
  • A890C
  • T908G
  • A932G
  • T1067C
  • C1073T
  • T1115C
  • A1175G
  • C1433T
  • C1616T
  • A1730G
  • G1799A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

NS1

  • NS1:E146K
  • NS1:S228T
  • NS1:A233T
  • NS1:L247F
  • NS1:S300T
  • NS1:V349M

NS2A

  • NS2A:I154V
  • NS2A:G187R
  • NS2A:K188R

NS3

  • NS3:I504V
  • NS3:H584Y

NS4B

  • NS4B:I26M
  • NS4B:I240T

NS5

  • NS5:V114M
  • NS5:P139S
  • NS5:T229I

pr

  • pr:N17S

prM

  • prM:N17S
Deletions
N/A
Insertions
N/A

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