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PPD_00SQN9M.1

India/MCL-21-H-8900_RNA-7139/2021-07-22
P. D. Yadav

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2021-07-22
Sampling location
India
Isolate name
MCL-21-H-8900_RNA-7139

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
Asian

INSDC

INSDC accession
NCBI release date
2022-03-26
NCBI update date
2022-03-26

Host

Host

Submission details

Submission ID
OM666892.1
Submitting group
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:02:26 UTC
Earliest release date
2022-03-26

Alignment and QC

Length
10753 (98.6%)
# of SNPs
184
# of inserted bases
2
# of deleted bases
16
# of unknown bases
107
# of frame shifts
3
Frame shifts
ancC:4-10(nt:117-137),C:4-10(nt:117-137),NS4B:87-89(nt:7173-7181)

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T188C
  • A254G
  • T299C
  • G423A
  • A523G
  • T558C
  • G653A
  • A656G
  • T719C
  • T773C
  • G797A
  • A803G
  • A884G
  • C947T
  • A953G
  • C954T
  • G968A
  • T1067C
Deletions
76, 138, 1512-1523, 7172, 10711
Insertions
ins_116:C, ins_7181:G

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

E

  • E:D348N
  • E:T470A
  • E:M473L

M

  • M:I67M

NS1

  • NS1:V84I
  • NS1:E146K
  • NS1:L154I
  • NS1:A233T
  • NS1:V349M

NS2A

  • NS2A:A58V

NS3

  • NS3:T215A

NS4B

  • NS4B:S14A
  • NS4B:I240T

NS5

  • NS5:Y74H
  • NS5:V114M
  • NS5:I322V
  • NS5:Q650L

ancC

  • ancC:A106T

pr

  • pr:N17S

prM

  • prM:N17S
  • prM:I160M
Deletions

C

C:11

E

E:179-182

ancC

ancC:11
Insertions
N/A

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