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PPD_00SQGEH.1
Download
Download FASTA
Download metadata TSV
India/211784/2021-07-28
P. D. Yadav
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2021-07-28
Sampling location
India (Pune City, Maharashtra State)
Isolate name
211784
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
Asian
INSDC
INSDC accession
OK054351.1
NCBI release date
2021-09-28
NCBI update date
2021-09-28
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OK054351.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-28 15:00:59 UTC
Date released
2026-08-28 15:02:26 UTC
Earliest release date
2021-09-28
Alignment and QC
Length
10748 (99.5%)
# of SNPs
749
# of inserted bases
3
# of deleted bases
13
Nucleotide mutations
Mutations called relative to the
NC_035889.1
reference
Substitutions
G
56
A
A
64
G
G
206
A
C
212
T
A
215
G
G
233
A
C
236
T
G
242
A
T
249
C
A
254
G
T
257
C
T
266
C
T
267
C
G
269
A
C
302
T
T
317
C
C
381
T
A
386
G
Show more
Deletions
76, 1434-1445
Insertions
ins_10386:AT, ins_10453:C
Amino acid substitutions
Substitutions called relative to the
NC_035889.1
reference
Substitutions
E
E:
A
333
S
E:
T
369
A
E:
E
393
D
E:
M
473
V
E:
M
487
T
NS1
NS1:
V
84
I
NS1:
R
125
K
NS1:
E
146
K
NS1:
V
188
I
NS1:
M
220
A
NS1:
T
222
A
NS1:
A
233
T
NS1:
I
236
V
NS1:
M
264
V
NS2A
NS2A:
T
30
A
NS2A:
I
45
V
NS2A:
A
58
T
NS2A:
V
143
A
NS2A:
F
180
L
NS2A:
R
222
K
NS2A:
S
223
N
NS3
NS3:
E
104
G
NS3:
H
400
N
NS3:
P
467
S
NS3:
L
472
M
NS3:
T
566
M
NS3:
A
578
V
NS3:
H
584
Y
NS4A
NS4A:
I
25
V
NS4A:
E
99
D
NS4B
NS4B:
S
14
G
NS4B:
I
26
M
NS4B:
F
49
L
NS4B:
I
98
M
NS4B:
M
160
I
NS4B:
K
169
R
NS4B:
V
180
I
NS4B:
I
184
V
NS4B:
S
186
L
NS4B:
I
240
T
NS5
NS5:
Y
74
H
NS5:
I
78
V
NS5:
V
114
M
NS5:
P
139
S
NS5:
T
229
I
NS5:
V
267
A
NS5:
C
269
R
NS5:
M
275
L
NS5:
S
376
N
NS5:
K
388
R
NS5:
R
391
Q
NS5:
I
526
A
NS5:
R
530
K
NS5:
K
587
G
NS5:
S
642
P
NS5:
N
647
S
NS5:
D
703
S
NS5:
H
719
Y
Show more
ancC
ancC:
T
108
A
ancC:
G
114
S
pr
pr:
A
1
V
pr:
N
17
S
pr:
D
18
N
pr:
A
22
T
pr:
M
31
V
prM
prM:
A
1
V
prM:
N
17
S
prM:
D
18
N
prM:
A
22
T
prM:
M
31
V
Deletions
E
E:153-156
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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