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PPD_00SPFL7.1

Gabon/SYMAV-H0931/2021-06-17
Y. Ushijima, H. Abe, M. J. V. M. Mbadinga, G. Nguema-Ondo, R. Bikangui, S. T. Agnandji, B. Lell & J. Yasuda

Nagasaki University, Department of Emerging Infectious Diseases; 1-12-4 Sakamoto, Nagasaki, Nagasaki 851-8523

Sample details

Collection date
2021-06-17
Sampling location
Gabon (Ndjole)
Isolate name
SYMAV-H0931

Data use terms

Data use terms
OPEN
Data use terms URL

Clade

Clade
African

INSDC

INSDC accession
NCBI release date
2022-08-26
NCBI update date
2022-08-26

Host

Host

Submission details

Submission ID
LC707380.1
Submitting group
Date submitted
2026-08-28 15:00:49 UTC
Date released
2026-08-28 15:02:26 UTC
Earliest release date
2022-08-26

Alignment and QC

Length
1851 (17.1%)
# of SNPs
220

Nucleotide mutations

Mutations called relative to the NC_035889.1 reference

Substitutions
  • T4622C
  • A4625C
  • T4637C
  • G4646A
  • A4652G
  • G4658A
  • G4661A
  • G4679A
  • A4688G
  • T4694C
  • T4697C
  • A4706G
  • A4718G
  • T4733C
  • G4745A
  • T4751C
  • T4757C
  • T4779G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_035889.1 reference

Substitutions

NS3

  • NS3:S56A
  • NS3:H92L
  • NS3:D122E
  • NS3:R169K
  • NS3:T215M
  • NS3:H400N
  • NS3:V407I
  • NS3:L472M
  • NS3:R583K
  • NS3:H584Y
Deletions
N/A
Insertions
N/A

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