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PPD_00R5M44.1

Israel/552/2026-06-28
O. Erster, M. S. Goldthorpe, H. Asraf, R. Shatrubi, R. Azar, V. Moshayoff & T. Butensky

Israel Central Virology Laboratory, Molecular Diagnostics

Sample details

Collection date
2026-06-28
Sampling location
Israel (Tel Aviv)
Isolate name
552

Data use terms

Data use terms
OPEN
Data use terms URL

Clade & Lineage

Clade
IIb
Outbreak
None
Lineage
None

INSDC

INSDC accession
NCBI release date
2026-08-19
NCBI update date
2026-08-19

Host

Host

Submission details

Submission ID
PZ823970.1
Submitting group
Date submitted
2026-08-28 13:30:44 UTC
Date released
2026-08-28 16:59:21 UTC
Earliest release date
2026-08-19

Alignment and QC

Length
573 (56.1%)
# of SNPs
112
# of inserted bases
11
# of deleted bases
110148
# of frame shifts
4
Frame shifts
OPG034:22-65(nt:19813-19942),OPG034:83-92(nt:19732-19761),OPG034:161-215(nt:19361-19525),OPG035:87-118(nt:20051-20146)

Nucleotide mutations

Mutations called relative to the NC_063383.1 reference

Substitutions
  • T18861A
  • A18911C
  • T18967G
  • A18970T
  • A19017G
  • C19088G
  • G19114A
  • T19118G
  • T19120A
  • T19121A
  • C19177T
  • C19199A
  • T19299C
  • A19303T
  • A19341T
  • T19343C
  • T19347G
  • A19351G
Deletions
18903-18908, 18917-18965, 18975-19012, 19018-19082, 19092-19110, 19122-19130, 19135-19166, 19179-19195, 19203-19297, 19309-19339, 19354-19389, 19403-19435, 19443-19464, 19471-19481, 19490-19499, 19505-19507, 19526-19622, 19631-19672, 19682-19687, 19703-19731, 19748, 19749, 19762-19778, 19790-19812, 19844-19873, 19883-19915, 19919-19927, 19934-19936, 19949-20018, 20027-20048,...
Insertions
ins_19348:CG, ins_19942:TA, ins_20413:CCG, ins_20450:G, ins_20517:GCC

Amino acid substitutions

Substitutions called relative to the NC_063383.1 reference

Substitutions

OPG034

  • OPG034:D73G

OPG036

  • OPG036:F175D
  • OPG036:Q176A
  • OPG036:*178V
Deletions

OPG034

OPG034:66-72, OPG034:77-82, OPG034:93-101, OPG034:115-160
Insertions

OPG036

ins_OPG036:178:LHN

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