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PPD_00JVZU3.1

USA/V26005870/2026-05-17
A. Hassan & B. Cherrelle

NJDOH PHEL Virology Shared Submissions, Public Health and Environmental Laboratories, Virology

Sample details

Collection date
2026-05-17
Sampling location
USA (New Jersey)
Isolate name
V26005870

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-08-10
NCBI update date
2026-08-10

Host

Host

Submission details

Submission ID
PZ777366.1
Submitting group
Date submitted
2026-08-12 05:40:36 UTC
Date released
2026-08-12 05:41:31 UTC
Earliest release date
2026-08-10

Alignment and QC

Length
15231 (99.9%)
# of SNPs
162
# of inserted bases
26
# of deleted bases
2
# of ambiguous bases
1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • A16G
  • A134G
  • A473G
  • G513T
  • G579A
  • C688T
  • T707C
  • A721G
  • G830A
  • C998A
  • C1114A
  • G1385A
  • C1561T
  • G1732A
  • T1846C
  • C2074T
Deletions
973, 4586
Insertions
ins_0:AACTTGCACACTCGAAAAAA, ins_15092:ATATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:R42K
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:F166Y
  • G:P214S
  • G:P221L
  • G:V249A
  • G:D251N
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:K570R
  • L:D1167E
  • L:A1694T
  • L:R1759K
  • L:V1965I
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:L44S
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:E83K
Deletions
N/A
Insertions
N/A

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