This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the example data repository. This instance should not be used for analysis.

PPD_00JVZPD.1

USA/V26004444/2026-04-20
A. Hassan & B. Cherrelle

NJDOH PHEL Virology Shared Submissions, Public Health and Environmental Laboratories, Virology

Sample details

Collection date
2026-04-20
Sampling location
USA (New Jersey)
Isolate name
V26004444

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-08-10
NCBI update date
2026-08-10

Host

Host

Submission details

Submission ID
PZ777355.1
Submitting group
Date submitted
2026-08-12 05:40:36 UTC
Date released
2026-08-12 05:41:31 UTC
Earliest release date
2026-08-10

Alignment and QC

Length
15206 (99.8%)
# of SNPs
134
# of inserted bases
14
# of deleted bases
2
# of ambiguous bases
1

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • G513T
  • G579A
  • A806T
  • C998A
  • C1225T
  • A1321G
  • G1385A
  • T1723C
  • G1732A
  • T1747C
  • T1846C
  • C2074T
  • C2198T
  • G2509A
  • C2554T
  • C2691T
Deletions
973, 4586
Insertions
ins_0:CTCGAAAAAA, ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:I59V
  • F:S190N
  • F:R209Q
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:A107V
  • G:T131A
  • G:I137T
  • G:N202K
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:*311Q

L

  • L:N149H
  • L:K570R
  • L:R1759K
  • L:T1987I
  • L:I2016M

M2-2

  • M2-2:I2T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:S75C

P

  • P:A69T
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue