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PPD_00JTJ43.1
Download
Download FASTA
Download metadata TSV
Saint_Helena/PPD_00JTJ43.1/2026-05
I. Everall,
J. Hill,
R. Doherty,
A. Wandre,
H. Hartman,
C. Gordon &
S. Pullan
UK Health Security Agency; UKHSA, Porton Down, Wiltshire
Sample details
Collection date
2026-05
Sampling location
Saint Helena (Tristan da Cunha)
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
OZ492894.1
INSDC accession M
OZ492895.1
INSDC accession S
OZ492896.1
BioProject accession
PRJEB120833
BioSample accession
SAMEA123055212
NCBI release date
2026-07-10
Host
Host
human (Homo sapiens)
Submission details
Submission ID
OZ492894.1.L/OZ492895.1.M/OZ492896.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-11 21:00:57 UTC
Date released
2026-07-11 21:01:28 UTC
Earliest release date
2026-07-10
Alignment and QC
Length L
6529 (99.5%)
# of SNPs L
387
# of unknown bases L
1
Length M
3518 (95.2%)
# of SNPs M
206
# of unknown bases M
25
Length S
1816 (96.5%)
# of SNPs S
127
# of inserted bases S
6
# of deleted bases S
2
# of unknown bases S
6
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
L
T
47
C
G
62
A
T
68
G
C
74
T
C
131
T
C
146
T
C
147
T
G
149
A
C
155
T
C
173
T
T
182
C
T
215
C
A
218
G
A
233
C
T
278
C
A
296
G
T
297
C
A
302
G
Show more
M
T
74
C
T
90
C
G
114
A
C
147
T
C
174
T
C
190
T
A
192
G
C
231
T
C
243
T
A
264
G
T
312
C
C
315
T
G
339
C
T
345
C
A
360
G
T
363
C
A
381
G
T
387
C
Show more
S
G
63
A
G
66
A
G
120
A
A
135
G
T
202
C
A
219
G
T
225
C
T
244
C
T
306
C
G
315
A
A
318
G
C
328
T
C
417
T
C
444
A
G
450
A
T
454
C
C
459
T
G
465
A
Show more
Deletions
S
1443, 1573
Insertions
S
ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
8
A
GPC:
I
114
V
GPC:
H
294
Y
GPC:
V
346
I
GPC:
T
353
V
GPC:
T
516
I
GPC:
I
537
V
GPC:
T
1023
A
GPC:
S
1055
T
GPC:
V
1127
I
Gc
Gc:
T
372
A
Gc:
S
404
T
Gc:
V
476
I
Gn
Gn:
V
8
A
Gn:
I
114
V
Gn:
H
294
Y
Gn:
V
346
I
Gn:
T
353
V
Gn:
T
516
I
Gn:
I
537
V
NSs
NSs:
Q
5
R
NSs:
E
33
G
NSs:
L
35
S
NSs:
I
62
T
RdRp
RdRp:
T
141
I
RdRp:
L
277
S
RdRp:
S
338
A
RdRp:
R
346
K
RdRp:
I
402
V
RdRp:
A
541
V
RdRp:
D
780
N
RdRp:
N
1033
D
RdRp:
D
1303
E
RdRp:
V
1665
I
RdRp:
K
1750
R
RdRp:
T
2113
A
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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