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PPD_00JT6HN.1
Download
Download FASTA
Download metadata TSV
DENV-1/Tanzania/PPD_00JT6HN.1/2025-10-09
A. Nagy &
O. Nagy
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses
Sample details
Collection date
2025-10-09
Sampling location
Tanzania (Zanzibar Island)
Isolate name
7406/2025 D1
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage & Serotype
Lineage
1III_A.2
Serotype
DENV-1
INSDC
INSDC accession
PZ602941.1
NCBI release date
2026-07-05
NCBI update date
2026-07-05
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ602941.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-06 08:02:20 UTC
Date released
2026-07-06 08:03:17 UTC
Earliest release date
2026-07-05
Alignment and QC
Length
10645 (99.4%)
# of SNPs
862
# of deleted bases
21
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
112
G
T
171
G
T
208
C
C
214
T
T
230
A
T
244
C
T
274
C
G
302
A
C
328
T
G
340
A
G
349
A
A
355
G
A
363
G
T
368
C
G
388
A
T
397
C
C
412
T
T
442
C
Show more
Deletions
10296-10311, 10318-10322
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
L
46
M
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
F
337
I
E:
S
339
T
E:
A
369
T
E:
V
380
I
E:
V
428
M
E:
I
436
V
E:
I
439
V
NS1
NS1:
V
89
I
NS1:
V
93
A
NS1:
S
94
N
NS1:
A
98
T
NS1:
V
128
T
NS1:
N
139
D
NS1:
N
146
D
NS1:
I
162
V
NS1:
V
178
M
NS1:
K
227
R
NS1:
D
278
N
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
I
15
V
NS2A:
G
35
A
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
A
64
V
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
A
147
T
NS2A:
V
155
I
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
L
199
F
NS2B
NS2B:
V
11
I
NS2B:
K
55
R
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS3:
Y
349
H
NS3:
V
384
I
NS3:
V
452
A
NS4A
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
19
V
NS4B:
A
27
T
NS4B:
V
31
I
NS4B:
K
212
R
NS5
NS5:
I
34
M
NS5:
L
123
I
NS5:
K
130
R
NS5:
I
181
V
NS5:
V
270
I
NS5:
K
364
R
NS5:
A
365
P
NS5:
R
378
K
NS5:
T
399
I
NS5:
E
559
Q
NS5:
N
585
S
NS5:
A
616
V
NS5:
T
635
N
NS5:
P
636
S
NS5:
V
642
A
NS5:
K
647
E
NS5:
T
651
V
NS5:
I
669
T
NS5:
F
881
Y
prM
prM:
S
15
T
prM:
T
59
A
prM:
E
72
D
prM:
K
118
R
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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