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PPD_00JSWD9.1
Download
Download FASTA
Download metadata TSV
DENV-1/China/SZBA_DV20250128/2025-07-27
M. Li
Shenzhen Campus of Sun Yat-sen University, School of Public Health (Shenzhen)
Sample details
Collection date
2025-07-27
Sampling location
China (Guangdong)
Isolate name
SZBA_DV20250128
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage & Serotype
Lineage
1I_K.1.1
Serotype
DENV-1
INSDC
INSDC accession
PZ234918.1
NCBI release date
2026-06-30
NCBI update date
2026-06-30
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ234918.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-01 08:02:23 UTC
Date released
2026-07-01 08:03:14 UTC
Earliest release date
2026-06-30
Alignment and QC
Length
10621 (98.9%)
# of SNPs
806
# of deleted bases
1
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
65
G
G
120
C
T
208
C
A
217
G
T
230
C
T
244
C
T
262
C
A
286
G
C
304
T
C
310
T
T
335
C
A
363
G
T
368
C
C
373
T
C
382
T
G
385
A
A
401
G
C
412
T
Show more
Deletions
10463
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
G
9
A
C:
N
90
S
C:
T
103
A
C:
L
109
M
E
E:
N
8
S
E:
N
52
D
E:
T
88
A
E:
T
155
S
E:
S
171
T
E:
K
203
E
E:
I
293
T
E:
V
324
I
E:
S
339
T
E:
V
380
I
E:
I
436
V
E:
I
461
V
E:
M
484
L
NS1
NS1:
S
94
A
NS1:
N
146
D
NS1:
D
278
G
NS1:
T
307
I
NS1:
K
324
R
NS2A
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
M
133
I
NS2A:
V
155
I
NS2A:
I
171
V
NS2A:
T
210
A
NS2B
NS2B:
I
106
V
NS2B:
M
112
L
NS2B:
K
127
R
NS3
NS3:
L
26
M
NS3:
G
44
N
NS3:
F
85
L
NS3:
A
91
T
NS3:
N
108
S
NS3:
V
221
I
NS3:
A
293
S
NS3:
D
350
E
NS3:
V
384
I
NS3:
Q
466
H
NS4A
NS4A:
K
39
R
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
20
V
NS4B:
A
27
T
NS5
NS5:
I
34
M
NS5:
T
135
M
NS5:
N
285
H
NS5:
R
325
K
NS5:
V
413
I
NS5:
D
432
N
NS5:
T
565
E
NS5:
S
566
A
NS5:
G
626
R
NS5:
E
640
K
NS5:
K
647
E
NS5:
H
649
Y
NS5:
T
651
V
NS5:
V
829
I
NS5:
F
881
Y
NS5:
M
882
T
prM
prM:
E
9
D
prM:
T
59
A
prM:
E
72
D
prM:
K
122
R
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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