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PPD_00JSQZ8.1

USA/PPD_00JSQZ8.1/2026-05-05
J. Garfin, M. Plumb, K. Pung, A. Mondelli, B. Weber, H. D. Kunerth, D. Evans, L. Bohnker-Voels, M. Anacker, J. Jencks & S. Namugenyi

Minnesota Department of Health Infectious Disease Laboratory Submission Group, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-05-05
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-04777

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-06-30
NCBI update date
2026-06-30
Raw reads accession

Host

Host

Submission details

Submission ID
PZ521742.1
Submitting group
Date submitted
2026-07-01 05:41:19 UTC
Date released
2026-07-01 05:42:13 UTC
Earliest release date
2026-06-30

Alignment and QC

Length
14871 (92.4%)
# of SNPs
144
# of inserted bases
6
# of deleted bases
2
# of unknown bases
803

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • A473G
  • G513T
  • A514G
  • G579A
  • C643T
  • C688T
  • T707C
  • G830A
  • C998A
  • A1075G
  • G1385A
  • A1704G
  • G1732A
  • T1846C
  • C2074T
  • C2125T
  • C2198T
  • C2203T
Deletions
973, 4586
Insertions
ins_15092:ATATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:A19S
  • F:R42K
  • F:S190N
  • F:R209Q
  • F:S211N
  • F:S389P
  • F:N515D

G

  • G:A74V
  • G:P96S
  • G:S100G
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:K570R
  • L:I824V
  • L:R1759K
  • L:V1965I
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I
  • N:K203R

NS2

  • NS2:E83K
Deletions
N/A
Insertions
N/A

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