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PPD_00JSF80.1
Download
Download FASTA
Download metadata TSV
YFV/unknown/PPD_00JSF80.1/2022-02-16
C. A. Hansen,
S. Rast,
J. K. Thompson,
H. Hao,
D. Jupiter,
S. Higgs,
N. Bourne &
A. D. T. Barrett
University of Texas Medical Branch, Pathology
Sample details
Collection date
2022-02-16
Isolate name
French neurotropic vaccine (281)
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
V
INSDC
INSDC accession
PX766920.1
NCBI release date
2026-06-24
NCBI update date
2026-06-24
Submission details
Submission ID
PX766920.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-27 20:30:38 UTC
Date released
2026-06-27 20:30:58 UTC
Earliest release date
2026-06-24
Alignment and QC
Length
10859 (100%)
# of SNPs
125
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
T
250
A
T
271
C
A
304
G
T
357
C
G
373
A
A
386
G
G
554
A
T
694
C
G
883
A
A
992
G
C
1006
T
T
1036
C
T
1042
C
A
1127
G
C
1134
T
T
1140
C
G
1306
A
T
1432
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
Y
9
F
2K:
A
20
V
C
C:
V
80
A
C:
S
90
G
E
E:
T
7
A
E:
R
52
G
E:
A
54
V
E:
V
56
A
E:
N
153
K
E:
V
170
A
E:
I
173
T
E:
T
200
K
E:
N
249
D
E:
I
299
M
E:
F
305
S
E:
S
325
P
E:
R
380
T
E:
V
407
A
E:
T
416
A
E:
M
457
I
NS1
NS1:
F
79
L
NS1:
V
307
I
NS2a
NS2a:
M
17
L
NS2a:
I
82
V
NS2a:
T
105
A
NS2a:
V
118
M
NS2a:
A
167
T
NS2a:
F
169
L
NS2a:
A
172
T
NS2a:
F
183
S
NS2b
NS2b:
L
37
I
NS2b:
S
60
A
NS2b:
L
109
I
NS3
NS3:
I
13
V
NS3:
M
192
K
NS3:
V
195
I
NS3:
V
280
I
NS3:
N
485
D
NS4a
NS4a:
F
30
L
NS4a:
V
107
I
NS4b
NS4b:
L
19
S
NS4b:
V
98
I
NS4b:
E
145
K
NS4b:
A
165
V
NS4b:
H
232
Y
RdRPol
RdRPol:
S
2
T
RdRPol:
R
22
Q
RdRPol:
I
258
T
RdRPol:
R
335
K
RdRPol:
F
531
L
RdRPol:
D
657
N
RdRPol:
K
660
R
RdRPol:
K
836
E
RdRPol:
I
878
V
RdRPol:
L
901
P
prM
prM:
V
25
M
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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