This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Organisms
HMPV
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Andes Virus [Hantavirus]
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Bundibugyo
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
HMPV
|
Browse data
Submit sequences
Resources
Select organism section
Browse data
Submit sequences
Resources
PPD_00JSC3D.1
Download
Download FASTA
Download metadata TSV
India/PPD_00JSC3D.1/2025-12-02
V. Potdar &
V. Vipat
National Institute of virology, National Influenza center
Sample details
Collection date
2025-12-02
Sampling location
India (Ahmed)
Isolate name
NIV25_296
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-26 10:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
B1
INSDC
INSDC accession
PZ399287.1
NCBI release date
2026-06-23
NCBI update date
2026-06-23
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ399287.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-26 10:00:56 UTC
Date released
2026-06-26 10:02:12 UTC
Earliest release date
2026-06-23
Alignment and QC
Length
13232 (98.9%)
# of SNPs
2447
# of inserted bases
1
# of deleted bases
114
# of unknown bases
139
# of frame shifts
1
# of stop codons
1
Frame shifts
G:216-237(nt:6890-6957)
Stop Codons
SH:177
Nucleotide mutations
Mutations called relative to the
NC_039199.1
reference
Substitutions
G
11
A
A
12
G
A
20
C
T
26
C
G
34
A
G
36
A
G
63
A
T
70
C
A
72
G
G
81
A
G
105
A
G
126
A
T
129
C
C
150
T
G
177
T
G
195
T
T
198
C
G
199
A
Show more
Deletions
24, 2934, 3009, 4684-4722, 6048, 6049, 6110-6113, 6196, 6210-6215, 6889, 6981-6983, 6990-7009, 7053-7055, 7144-7147, 13188, 13206-13218, 13301-13314
Insertions
ins_2981:C
Amino acid substitutions
Substitutions called relative to the
NC_039199.1
reference
Substitutions
F
F:
V
6
M
F:
F
9
I
F:
R
82
K
F:
V
122
I
F:
T
135
N
F:
N
139
G
F:
K
143
Q
F:
D
167
E
F:
R
175
S
F:
K
179
R
F:
N
233
Y
F:
F
258
I
F:
V
286
I
F:
G
294
E
F:
K
296
N
F:
Q
312
K
F:
K
348
R
F:
N
404
P
Show more
G
G:
K
4
R
G:
T
10
A
G:
L
14
F
G:
R
17
K
G:
V
18
I
G:
V
22
I
G:
A
23
R
G:
R
24
S
G:
K
26
R
G:
F
28
Y
G:
K
29
R
G:
N
30
Y
G:
S
32
T
G:
V
34
I
G:
I
38
L
G:
I
43
M
G:
Y
48
F
G:
I
50
V
Show more
L
L:
L
4
F
L:
N
5
C
L:
I
50
V
L:
I
55
V
L:
K
61
R
L:
N
65
M
L:
S
66
T
L:
I
75
V
L:
V
89
M
L:
T
109
S
L:
I
115
M
L:
D
127
N
L:
S
132
N
L:
S
141
V
L:
K
162
R
L:
V
182
I
L:
I
189
V
L:
S
228
N
Show more
M
M:
I
23
V
M:
E
103
D
M:
E
111
D
M:
T
156
I
M:
K
237
R
M:
T
241
S
M2-1
M2-1:
A
5
T
M2-1:
E
20
D
M2-1:
I
37
L
M2-1:
R
52
K
M2-1:
S
88
G
M2-1:
V
108
T
M2-1:
V
130
I
M2-1:
R
149
K
M2-1:
K
160
R
M2-1:
A
169
T
M2-1:
E
170
D
M2-1:
S
173
P
M2-2
M2-2:
E
18
K
M2-2:
V
22
K
M2-2:
V
28
S
M2-2:
D
37
E
M2-2:
A
41
T
M2-2:
N
55
S
M2-2:
A
68
T
N
N:
A
54
T
N:
A
57
T
N:
I
67
M
N:
S
71
C
N:
R
96
K
N:
I
103
G
N:
N
106
S
N:
D
110
E
N:
A
136
V
N:
M
201
V
N:
D
212
E
N:
H
220
Y
N:
M
258
L
N:
A
280
S
N:
K
356
R
N:
V
385
M
N:
D
387
G
N:
S
389
N
N:
N
391
D
P
P:
L
19
I
P:
R
28
K
P:
P
30
S
P:
S
35
T
P:
I
39
V
P:
V
46
I
P:
R
57
K
P:
K
60
R
P:
P
61
S
P:
T
62
S
P:
I
63
T
P:
P
64
L
P:
S
65
L
P:
T
72
A
P:
K
74
N
P:
G
75
S
P:
A
77
I
P:
T
80
I
Show more
SH
SH:
I
2
K
SH:
K
14
E
SH:
T
17
N
SH:
H
18
Q
SH:
I
22
T
SH:
D
25
K
SH:
L
44
F
SH:
I
50
V
SH:
I
61
A
SH:
T
66
N
SH:
D
69
E
SH:
D
72
V
SH:
S
73
T
SH:
S
74
K
SH:
S
75
L
SH:
V
80
T
SH:
T
82
I
SH:
K
83
R
Show more
Deletions
G
G:214, G:215
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue