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PPD_00JR8S6.1
Download
Download FASTA
Download metadata TSV
USA/PPD_00JR8S6.1/2026-04-04
K. Smith,
J. Martinez,
H. Yu,
B. Bertrand,
M. Heck,
A. Ramaiah &
E. Kersh
GPHL, Bacteriology
Sample details
Collection date
2026-04-04
Sampling location
USA (Georgia)
Isolate name
RSV-20260601-021
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-14 05:10
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A.D.3
INSDC
INSDC accession
PZ495646.1
BioProject accession
PRJNA1400014
BioSample accession
SAMN60578497
NCBI release date
2026-06-13
NCBI update date
2026-06-13
Raw reads accession
SRR38954600
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ495646.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-14 05:10:29 UTC
Date released
2026-06-14 05:10:53 UTC
Earliest release date
2026-06-13
Alignment and QC
Length
15092 (99%)
# of SNPs
225
# of inserted bases
3
# of deleted bases
1
# of unknown bases
11
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
A
67
G
C
90
T
C
183
T
C
228
T
C
411
T
T
508
C
C
511
T
G
587
T
C
611
A
A
630
G
T
667
C
T
733
C
A
992
G
T
1004
C
C
1012
T
T
1032
C
G
1034
A
G
1050
A
Show more
Deletions
4592
Insertions
ins_3154:A, ins_15115:TT
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
E
2
D
F:
T
12
I
F:
L
15
F
G
G:
V
69
A
G:
P
71
L
G:
H
90
Y
G:
L
101
I
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
R
151
H
G:
N
178
G
G:
P
206
L
G:
G
224
E
G:
V
225
A
G:
K
233
E
G:
S
243
I
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
Show more
L
L:
I
71
M
L:
I
81
L
L:
P
171
L
L:
R
256
K
L:
K
259
R
L:
I
393
V
L:
S
560
L
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
D
1644
E
L:
N
1723
S
L:
N
1724
D
L:
E
1725
G
L:
G
1731
D
L:
N
1737
T
L:
V
1864
I
M2-1
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
M2-2:
T
77
A
N
N:
Y
149
H
N:
Y
216
H
N:
V
352
A
NS2
NS2:
H
5
N
NS2:
Q
11
R
P
P:
L
55
P
P:
T
92
M
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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