This is a demo instance. You can upload any data you like, including test data to try things out. You can find test data to upload in the
example data
repository. This instance should not be used for analysis.
X
Pathoplexus
Organisms
Yellow Fever Virus
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Andes Virus [Hantavirus]
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Bundibugyo
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
Yellow Fever Virus
|
Browse data
Submit sequences
Resources
Select organism section
Browse data
Submit sequences
Resources
PPD_00JQU07.1
Download
Download FASTA
Download metadata TSV
YFV/unknown/PPD_00JQU07.1/2022-07-25
C. A. Hansen,
S. Rast,
J. K. Thompson,
H. Hao,
D. Jupiter,
S. Higgs,
N. Bourne &
A. D. T. Barrett
University of Texas Medical Branch, Pathology
Sample details
Collection date
2022-07-25
Isolate name
French neurotropic virus NT (FNV-NT)
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-11 06:30
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
V
INSDC
INSDC accession
PX660175.1
NCBI release date
2026-06-10
NCBI update date
2026-06-10
Submission details
Submission ID
PX660175.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-11 06:30:34 UTC
Date released
2026-06-11 06:31:15 UTC
Earliest release date
2026-06-10
Alignment and QC
Length
10765 (100%)
# of SNPs
175
# of deleted bases
96
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
T
247
C
T
275
C
A
304
G
C
337
T
T
357
C
C
370
T
G
373
A
A
386
G
T
455
C
G
554
A
G
556
T
A
562
G
T
596
C
T
844
C
G
883
A
C
1006
T
T
1036
C
T
1042
C
Show more
Deletions
10374-10469
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
Y
9
F
2K:
A
20
L
C
C:
F
53
L
C:
V
80
A
C:
S
90
G
E
E:
R
52
G
E:
A
54
V
E:
V
56
A
E:
R
140
K
E:
A
141
V
E:
N
151
D
E:
D
155
A
E:
I
156
T
E:
V
170
A
E:
I
173
T
E:
T
200
K
E:
N
249
D
E:
I
299
M
E:
F
305
S
E:
S
325
P
E:
R
380
T
E:
T
416
A
NS1
NS1:
F
79
L
NS1:
K
261
R
NS1:
V
307
I
NS1:
K
339
N
NS2a
NS2a:
I
82
V
NS2a:
T
105
A
NS2a:
V
118
M
NS2a:
A
167
T
NS2a:
F
169
L
NS2a:
A
172
T
NS2a:
F
183
S
NS2b
NS2b:
A
11
V
NS2b:
L
37
I
NS2b:
S
60
A
NS2b:
D
95
G
NS2b:
L
109
I
NS2b:
H
124
Y
NS3
NS3:
R
62
W
NS3:
V
103
A
NS3:
M
192
K
NS3:
V
195
I
NS3:
V
280
I
NS3:
N
485
D
NS4a
NS4a:
V
7
A
NS4a:
F
30
L
NS4a:
M
55
L
NS4a:
V
107
I
NS4a:
M
108
L
NS4b
NS4b:
S
23
G
NS4b:
V
98
I
NS4b:
E
145
K
NS4b:
H
232
Y
RdRPol
RdRPol:
D
20
N
RdRPol:
R
22
Q
RdRPol:
I
132
V
RdRPol:
S
152
P
RdRPol:
I
258
T
RdRPol:
R
335
K
RdRPol:
K
431
R
RdRPol:
L
435
M
RdRPol:
F
531
L
RdRPol:
K
660
R
RdRPol:
M
828
I
RdRPol:
K
836
E
RdRPol:
I
878
V
RdRPol:
L
901
P
prM
prM:
V
25
I
prM:
Y
39
H
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue